Man pages for oandrefonseca/crossdome
An R package to measure cross-reactivity risk in the sequence-space
| cross_background | Creating immunopeptidomics database |
| cross_browser | Launching Crossdome web application |
| cross_compose | Performing Crossdome screening |
| cross_expression_matrix | Collecting gene-donor expression data |
| cross_expression_plot | Expression heatmap |
| cross_pair_summary | Crossdome relatedness score |
| cross_pairwise_plot | Correlation plot |
| cross_peptide_properties | Converts a peptide to biochemical profile |
| cross_prediction_plot | Prediction dot plots |
| cross_substitution_matrix | Substitution matrix analysis |
| cross_substitution_plot | Substitution heatmap |
| cross_tissues_plot | Tissue-specificity barplot |
| cross_write | Data Output |
| hla_database | HLA Database |
| hpa_database | HPA Expression |
| mage_off_targets | MAGE3A Off-targets (Gee et. al. 2018) |
| peptide_annotation | Peptide Annotation |
| pipe | Pipe operator |
| show | show |
| xrBackground-class | Class "xrBackground" |
| xrResult-class | Class "xrResult" |
