cross_pair_summary: Crossdome relatedness score

In oandrefonseca/crossdome: An R package to measure cross-reactivity risk in the sequence-space

Crossdome relatedness score

Description

Calculates relatedness score between peptides

Usage

cross_pair_summary(query, subject, position_weight = rep(1, 9))

Arguments

query	A peptide target. Only 9-mers are supported.
subject	Putative off-target candidate. Only 9-mers are supported.
position_weight	A numeric vector derived from TCR hotspots

Value

Returns the list holding Crossdome metrics

Examples

query <- 'EVDPIGHLY'
subject <- 'ESDPIVAQY'
cross_pair_summary(query = query, subject = subject)

oandrefonseca/crossdome documentation built on March 30, 2023, 7:10 p.m.