cross_substitution_matrix: Substitution matrix analysis

In oandrefonseca/crossdome: An R package to measure cross-reactivity risk in the sequence-space

Substitution matrix analysis

Description

Calculates position-specific substitution across cross-reactive candidates.

Usage

cross_substitution_matrix(object, ...)

## S4 method for signature 'xrResult'
cross_substitution_matrix(object, rank = NULL, pvalue_threshold = 0.01)

Arguments

object	Depends on xrResult object. Run cross_compose function.
rank	A numeric value to filter number of candidates
pvalue_threshold	P-value threshold

Value

Returns a matrix with amino acid substitution probabilies.

Examples

## Not run: 
 result <- cross_substitution_matrix(object = result)

## End(Not run)

oandrefonseca/crossdome documentation built on March 30, 2023, 7:10 p.m.