combine_folds: Combine Results from Deltas Function into One CSV File

In obenlan2/DoubleDelta: Calculations for the Double Delta Ct Method

Description

Output taken from the deltas function and adds it to a new CSV file that is named by the user. The user will can also to add labels for each of the fold changes.

Usage

combine_folds(Fold, new_file, gene_names)

Arguments

Fold	Fold change results from the Deltas function. Users can use a single result or a vector of results in this argument.
new_file	Name of the new CSV file. Must be in quotes and have the .csv extension.
gene_names	A character string containing descriptive information about the fold changes.

Value

This function returns a data frame that contains two columns denoted as "Gene_Name" and "Fold_change". The information inputted to the gene_names argument will be in the "Gene_Name" column and the data inputted to the Fold argument will be in the "Fold_change" column.

See Also

deltas Read_Combine_Quality

Examples

mypath1 <- system.file("extdata", "example1.csv", package = "DoubleDelta")
mypath3 <- system.file("extdata", "example3.csv", package = "DoubleDelta")
data1 <- read.csv(mypath1)
data3 <- read.csv(mypath3)

a <- deltas(data1, "Gene1", "6HAT", "UT", "ST", "BTUB", "GTPB", "GAPDH")
b <- deltas(data3, "Gene1", "12HAT", "UT", "ST", "BTUB", "GTPB", "GAPDH")

#Making Temporary File Located in Temp Directory
outfile1 <- tempfile(fileext = "All_Data.csv")

#Run the following code to put "All_Data.csv" file in the Temp Directory.

combine_folds(c(a,b), outfile1, c("Gene1 6HAT", "Gene2 12HAT"))

## Not run: 
#Run the following code if you want to view "All_Data.csv" in your designated directory.

combine_folds(c(a,b), "All_Data.csv", c("Gene1 6HAT", "Gene2 12HAT"))

## End(Not run)

obenlan2/DoubleDelta documentation built on May 5, 2019, 7:10 a.m.