Files in ocelhay/como
A Web Application of the CoMo COVID-19 Model

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE.txt
NAMESPACE
R/comomodel.R R/run_app_standalone.R README.md
Template_CoMoCOVID-19App_v16.xlsx
Template_CoMoCOVID-19App_v17.xlsx
Template_CoMoCOVID-19App_v18.xlsx
data_preparation/prepare_data.R
data_preparation/raw_data/COVID_severe_mortality_age.csv
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_all_locations_1.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_all_locations_2.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_home_1.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_home_2.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_other_locations_1.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_other_locations_2.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_school_1.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_school_2.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_work_1.xlsx
data_preparation/raw_data/contact_matrices_152_countries/MUestimates_work_2.xlsx
data_preparation/raw_data/mort_sever_default.Rda
data_preparation/raw_data/population_UN/WPP2019_FERT_F06_BIRTHS_BY_AGE_OF_MOTHER.xlsx
data_preparation/raw_data/population_UN/WPP2019_MORT_F04_1_DEATHS_BY_AGE_BOTH_SEXES.xlsx
data_preparation/raw_data/population_UN/WPP2019_POP_F07_1_POPULATION_BY_AGE_BOTH_SEXES.xlsx
docs/CNAME
docs/index.html
inst/comoapp/app.R
inst/comoapp/www/CoMo-logo-medium-white_resized.png
inst/comoapp/www/como_logo.png
inst/comoapp/www/como_policy_makers.png
inst/comoapp/www/data/cases.Rda
inst/comoapp/www/data/contacts.Rda
inst/comoapp/www/data/demog.Rda
inst/comoapp/www/data/mort_sever_default.Rda
inst/comoapp/www/markdown/about_country_data.md inst/comoapp/www/markdown/about_data.md inst/comoapp/www/markdown/disclaimer.md inst/comoapp/www/markdown/generate_uncertainty.md inst/comoapp/www/markdown/help_legend_csv.md inst/comoapp/www/markdown/help_upload_template.md inst/comoapp/www/markdown/help_value_unit_interventions.md inst/comoapp/www/markdown/readable_license.md inst/comoapp/www/markdown/stages_countries.md inst/comoapp/www/markdown/welcome.md inst/comoapp/www/model/fun_check_parameters_list_for_na.R inst/comoapp/www/model/fun_conf_interval.R inst/comoapp/www/model/fun_inputs.R inst/comoapp/www/model/fun_multi_runs.R inst/comoapp/www/model/fun_parse_age_group.R inst/comoapp/www/model/fun_process_ode_outcome.R inst/comoapp/www/model/fun_process_ode_outcome_compute.R inst/comoapp/www/model/fun_validation_interventions.R inst/comoapp/www/model/model_once.R inst/comoapp/www/model/model_repeat.R inst/comoapp/www/outputs/feedback_choices.R inst/comoapp/www/outputs/highchart_Rt_dual.R inst/comoapp/www/outputs/highchart_cases_dual.R inst/comoapp/www/outputs/highchart_deaths_dual.R inst/comoapp/www/outputs/highchart_requirements_dual.R inst/comoapp/www/outputs/plot_Rt_baseline.R inst/comoapp/www/outputs/plot_cases_baseline.R inst/comoapp/www/outputs/plot_deaths_baseline.R inst/comoapp/www/outputs/plot_mortality_lag_dual.R inst/comoapp/www/outputs/plot_requirements_baseline.R inst/comoapp/www/outputs/plot_seroprev_baseline.R inst/comoapp/www/outputs/plot_total_deaths_age_baseline.R inst/comoapp/www/outputs/plot_total_deaths_age_dual.R inst/comoapp/www/outputs/text_boxes_dual.R inst/comoapp/www/outputs/text_feedback_interventions_dual.R inst/comoapp/www/outputs/timevis_baseline.R inst/comoapp/www/outputs/timevis_baseline_hc.R inst/comoapp/www/outputs/timevis_future.R inst/comoapp/www/outputs/timevis_future_hc.R inst/comoapp/www/report.Rmd
inst/comoapp/www/styles.css
inst/comoapp/www/ui/interventions_baseline.R inst/comoapp/www/ui/interventions_future.R inst/comoapp/www/ui/pushbar_generate_uncertainty.R inst/comoapp/www/ui/pushbar_parameters_country.R inst/comoapp/www/ui/pushbar_parameters_hospital.R inst/comoapp/www/ui/pushbar_parameters_interventions.R inst/comoapp/www/ui/pushbar_parameters_reporting.R inst/comoapp/www/ui/pushbar_parameters_virus.R
inst/icons/icon.icns
inst/icons/icon.png
man/comomodel.Rd man/run_app_standalone.Rd
misc/JS_test_intervention.js
misc/Results_Legend_CoMoCOVID-19App.xlsx
misc/about_deaths_indicators.md misc/como standalone/como_standalone_Windows.R misc/como standalone/como_standalone_macOS.R misc/draft_fun_parse_interventions_v17.R misc/generation_interventions_ui.R
misc/maps/CoMo_Countries_2020-08-21.png
misc/maps/CoMo_Countries_transparent_2020-08-21.png
misc/pnas/PNAS_MS_2020-25448_Supplemental_Data.csv
misc/report_full_parameter_table.xlsx
misc/scripts/2021-02-08_inputs_v17.txt
misc/scripts/bridge_script_app.R misc/scripts/covidage_v16.5.R misc/scripts/covidage_v16.6.R misc/scripts/covidage_v16.7.R misc/scripts/covidage_v16.8.R
ocelhay/como documentation built on April 18, 2023, 10:29 a.m.