Man pages for odavalos/scGrabBag
Useful functions for single-cell projects
| abundanceDotplot | Relative Abundance Dotplot |
| addCelltypeColorPal | Add celltype color palette to Seurat object |
| extractSlinghot | Extract pseudotime from Slingshot object |
| findPCs | Determine the number of PCs to use for downstream analysis |
| getresolutionsizes | Number of unique clusters generated per resolution |
| personalTheme | My personal ggplot2 theme |
| pipe | Pipe operator |
| plotLineage | Plot slingshot lineages on UMAP |
| prepAnalysisDir | This function creates a directory for the sample and... |
| runImmunePredictions | Run SingleR, scType and ProjectTILs on a Seurat object |
| runQuickSeurat | A function to run a quick Seurat analysis |
| RunSoupX | Run SoupX using Seurat clustering |
| scVolcanoPlot | Function to create volcanoplot from Seurat scRNAseq... |
| topDEGBarplot | This function will create a barplot of the top differentially... |
