extractSlinghot: Extract pseudotime from Slingshot object
In odavalos/scGrabBag: Useful functions for single-cell projects
View source: R/extractSlingshot.R
extractSlinghot R Documentation
Extract pseudotime from Slingshot object
Description
Extract pseudotime values from Slingshot object and return as a dataframe
Usage
extractSlinghot(sds)
Arguments
sds
Slingshot object
Value
Dataframe containing pseudotime values
Examples
## Not run:
sds <- slingshot::slingshot(sce, clusterCol = "cluster")
pseudotime_df <- extractPseudotime(sds)
head(pseudotime_df)
## End(Not run)
odavalos/scGrabBag documentation built on Jan. 15, 2025, 11:45 p.m.
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View source: R/extractSlingshot.R
| extractSlinghot | R Documentation |
Extract pseudotime from Slingshot object
Description
Extract pseudotime values from Slingshot object and return as a dataframe
Usage
extractSlinghot(sds)
Arguments
sds |
Slingshot object |
Value
Dataframe containing pseudotime values
Examples
## Not run:
sds <- slingshot::slingshot(sce, clusterCol = "cluster")
pseudotime_df <- extractPseudotime(sds)
head(pseudotime_df)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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