plotEstimates: Plot cell type profile estimates

In oganm/brainGenesManuscript: Marker genes of brain cell types and their use in analysis of whole tissue data

Plot cell type profile estimates

Description

A convenience function to plot the estimates

Usage

plotEstimates(estimates, groups, plotNames, sigTest = wilcox.test,
  pAdjMethod = p.adjust.methods, comparisons = "all")

Arguments

groups	A names list of groups $groups part pf the cellTypeEstimate function's output
plotNames	a vector of strings. full address of the plots
sigTest	function to be used in calculation of p values for comparisons
pAdjMethod	character. which method to use when adjusting p values for multiple testing correction
comparisons	a 2 by n matrix that includes group name pairs, indicating which groups should be compared when calculating the p values. or "all" which will make comparison between all available groups by setting it to combn(groups,2)
estimates.	a named list of cell type estimates. $estimates part of the cellTypeEstimate function's output.

oganm/brainGenesManuscript documentation built on Aug. 24, 2022, 7:48 p.m.