Files in ohdsi-studies/IbdCharacterization
Characterization of Inflammatory Bowel Disease Patient Cohorts
.Rbuildignore
.gitignore
DESCRIPTION
IbdCharacterization.Rproj
LICENSE
NAMESPACE
R/CohortCharacterization.R
R/CohortConstruction.R
R/CohortDiagnostics.R
R/FeatureConstruction.R
R/IbdCharacterization.R
R/Incremental.R
R/Logging.R
R/ResourceFiles.R
R/RunStudy.R
R/Sharing.R
R/Shiny.R
R/StrataConstruction.R
README.md
documents/Protocol IBD Characterisation.docx
extras/CodeToRun.R
extras/Download-cohorts-from-WebAPI.R
extras/ExcludeResultsExample.R
extras/IbdCharacterization.pdf
extras/PackageMaintenance.R
extras/RunShiny.R
extras/renvInitScr.R
extras/renv_setup.R
inst/cohorts/200.json
inst/cohorts/201.json
inst/cohorts/202.json
inst/cohorts/203.json
inst/cohorts/204.json
inst/cohorts/306.json
inst/cohorts/307.json
inst/cohorts/308.json
inst/cohorts/309.json
inst/cohorts/310.json
inst/cohorts/311.json
inst/cohorts/314.json
inst/cohorts/315.json
inst/cohorts/322.json
inst/cohorts/323.json
inst/cohorts/450.json
inst/cohorts/451.json
inst/cohorts/452.json
inst/cohorts/453.json
inst/cohorts/455.json
inst/cohorts/456.json
inst/cohorts/457.json
inst/cohorts/458.json
inst/cohorts/459.json
inst/cohorts/460.json
inst/cohorts/461.json
inst/cohorts/500.json
inst/cohorts/501.json
inst/cohorts/502.json
inst/cohorts/503.json
inst/cohorts/504.json
inst/cohorts/505.json
inst/cohorts/506.json
inst/cohorts/507.json
inst/cohorts/508.json
inst/cohorts/509.json
inst/cohorts/510.json
inst/cohorts/550.json
inst/cohorts/552.json
inst/cohorts/554.json
inst/cohorts/555.json
inst/cohorts/556.json
inst/cohorts/557.json
inst/cohorts/558.json
inst/cohorts/559.json
inst/cohorts/562.json
inst/cohorts/563.json
inst/cohorts/564.json
inst/cohorts/565.json
inst/cohorts/566.json
inst/cohorts/567.json
inst/cohorts/568.json
inst/cohorts/569.json
inst/cohorts/570.json
inst/cohorts/571.json
inst/cohorts/573.json
inst/cohorts/574.json
inst/cohorts/575.json
inst/cohorts/576.json
inst/cohorts/577.json
inst/cohorts/578.json
inst/cohorts/600.json
inst/cohorts/601.json
inst/cohorts/602.json
inst/cohorts/603.json
inst/cohorts/604.json
inst/cohorts/606.json
inst/cohorts/608.json
inst/cohorts/609.json
inst/cohorts/610.json
inst/cohorts/611.json
inst/cohorts/613.json
inst/cohorts/614.json
inst/cohorts/615.json
inst/cohorts/616.json
inst/cohorts/617.json
inst/cohorts/618.json
inst/cohorts/650.json
inst/cohorts/651.json
inst/cohorts/652.json
inst/cohorts/653.json
inst/cohorts/654.json
inst/cohorts/655.json
inst/cohorts/656.json
inst/cohorts/657.json
inst/cohorts/658.json
inst/cohorts/700.json
inst/cohorts/701.json
inst/cohorts/702.json
inst/cohorts/703.json
inst/cohorts/704.json
inst/cohorts/705.json
inst/cohorts/706.json
inst/cohorts/707.json
inst/cohorts/708.json
inst/cohorts/709.json
inst/cohorts/710.json
inst/cohorts/711.json
inst/cohorts/712.json
inst/cohorts/713.json
inst/cohorts/751.json
inst/cohorts/752.json
inst/cohorts/753.json
inst/cohorts/754.json
inst/cohorts/755.json
inst/cohorts/758.json
inst/cohorts/800.json
inst/cohorts/801.json
inst/cohorts/802.json
inst/cohorts/803.json
inst/cohorts/804.json
inst/cohorts/850.json
inst/cohorts/851.json
inst/cohorts/853.json
inst/cohorts/900.json
inst/cohorts/901.json
inst/cohorts/902.json
inst/cohorts/903.json
inst/cohorts/904.json
inst/cohorts/905.json
inst/cohorts/906.json
inst/cohorts/950.json
inst/cohorts/951.json
inst/cohorts/952.json
inst/cohorts/953.json
inst/cohorts/954.json
inst/cohorts/955.json
inst/cohorts/956.json
inst/cohorts/957.json
inst/cohorts/958.json
inst/cohorts/IBD Meds.json
inst/settings/BulkStrata.csv
inst/settings/CohortGroups.csv
inst/settings/CohortGroupsDiagnostics.csv
inst/settings/CohortsToCreateCD.csv
inst/settings/CohortsToCreateFeature.csv
inst/settings/CohortsToCreateIBD.csv
inst/settings/CohortsToCreateStrata.csv
inst/settings/CohortsToCreateUC.csv
inst/settings/diagnostics/CohortsToCreateCD.csv
inst/settings/diagnostics/CohortsToCreateFeature.csv
inst/settings/diagnostics/CohortsToCreateIBD.csv
inst/settings/diagnostics/CohortsToCreateStrata.csv
inst/settings/diagnostics/CohortsToCreateUC.csv
inst/settings/featureTimeWindows.csv
inst/settings/targetStrataXref.csv
inst/shiny/IbdCharacterizationResultsExplorer/DataPulls.R
inst/shiny/IbdCharacterizationResultsExplorer/IbdCharacterizationResultsExplorer.Rproj
inst/shiny/IbdCharacterizationResultsExplorer/PlotsAndTables.R
inst/shiny/IbdCharacterizationResultsExplorer/Table1Specs.csv
inst/shiny/IbdCharacterizationResultsExplorer/changeLog.Rmd
inst/shiny/IbdCharacterizationResultsExplorer/changeLog.html
inst/shiny/IbdCharacterizationResultsExplorer/cohortXref.csv
inst/shiny/IbdCharacterizationResultsExplorer/cohorts.csv
inst/shiny/IbdCharacterizationResultsExplorer/databaseTermsOfUse.csv
inst/shiny/IbdCharacterizationResultsExplorer/exampleResultsQuery.sql
inst/shiny/IbdCharacterizationResultsExplorer/global.R
inst/shiny/IbdCharacterizationResultsExplorer/html/cohortCharacterization.html
inst/shiny/IbdCharacterizationResultsExplorer/html/cohortCounts.html
inst/shiny/IbdCharacterizationResultsExplorer/html/compareCohortCharacterization.html
inst/shiny/IbdCharacterizationResultsExplorer/html/download.html
inst/shiny/IbdCharacterizationResultsExplorer/md/about.md
inst/shiny/IbdCharacterizationResultsExplorer/md/terms_of_use.md
inst/shiny/IbdCharacterizationResultsExplorer/networkSchema.sql
inst/shiny/IbdCharacterizationResultsExplorer/server.R
inst/shiny/IbdCharacterizationResultsExplorer/ui.R
inst/shiny/IbdCharacterizationResultsExplorer/www/favicon.ico
inst/shiny/IbdCharacterizationResultsExplorer/www/js/IbdCharacterization.js
inst/shiny/IbdCharacterizationResultsExplorer/www/js/lib/js.cookie.js
inst/shiny/IbdCharacterizationResultsExplorer/www/logo.png
inst/shiny/IbdCharacterizationResultsExplorer/www/ohdsi.css
inst/sql/sql_server/.DS_Store
inst/sql/sql_server/200.sql
inst/sql/sql_server/201.sql
inst/sql/sql_server/202.sql
inst/sql/sql_server/203.sql
inst/sql/sql_server/204.sql
inst/sql/sql_server/306.sql
inst/sql/sql_server/307.sql
inst/sql/sql_server/308.sql
inst/sql/sql_server/309.sql
inst/sql/sql_server/310.sql
inst/sql/sql_server/311.sql
inst/sql/sql_server/314.sql
inst/sql/sql_server/315.sql
inst/sql/sql_server/322.sql
inst/sql/sql_server/323.sql
inst/sql/sql_server/450.sql
inst/sql/sql_server/451.sql
inst/sql/sql_server/452.sql
inst/sql/sql_server/453.sql
inst/sql/sql_server/455.sql
inst/sql/sql_server/456.sql
inst/sql/sql_server/457.sql
inst/sql/sql_server/458.sql
inst/sql/sql_server/459.sql
inst/sql/sql_server/460.sql
inst/sql/sql_server/461.sql
inst/sql/sql_server/500.sql
inst/sql/sql_server/501.sql
inst/sql/sql_server/502.sql
inst/sql/sql_server/503.sql
inst/sql/sql_server/504.sql
inst/sql/sql_server/505.sql
inst/sql/sql_server/506.sql
inst/sql/sql_server/507.sql
inst/sql/sql_server/508.sql
inst/sql/sql_server/509.sql
inst/sql/sql_server/510.sql
inst/sql/sql_server/550.sql
inst/sql/sql_server/552.sql
inst/sql/sql_server/554.sql
inst/sql/sql_server/555.sql
inst/sql/sql_server/556.sql
inst/sql/sql_server/557.sql
inst/sql/sql_server/558.sql
inst/sql/sql_server/559.sql
inst/sql/sql_server/562.sql
inst/sql/sql_server/563.sql
inst/sql/sql_server/564.sql
inst/sql/sql_server/565.sql
inst/sql/sql_server/566.sql
inst/sql/sql_server/567.sql
inst/sql/sql_server/568.sql
inst/sql/sql_server/569.sql
inst/sql/sql_server/570.sql
inst/sql/sql_server/571.sql
inst/sql/sql_server/573.sql
inst/sql/sql_server/574.sql
inst/sql/sql_server/575.sql
inst/sql/sql_server/576.sql
inst/sql/sql_server/577.sql
inst/sql/sql_server/578.sql
inst/sql/sql_server/600.sql
inst/sql/sql_server/601.sql
inst/sql/sql_server/602.sql
inst/sql/sql_server/603.sql
inst/sql/sql_server/604.sql
inst/sql/sql_server/606.sql
inst/sql/sql_server/608.sql
inst/sql/sql_server/609.sql
inst/sql/sql_server/610.sql
inst/sql/sql_server/611.sql
inst/sql/sql_server/613.sql
inst/sql/sql_server/614.sql
inst/sql/sql_server/615.sql
inst/sql/sql_server/616.sql
inst/sql/sql_server/617.sql
inst/sql/sql_server/618.sql
inst/sql/sql_server/650.sql
inst/sql/sql_server/651.sql
inst/sql/sql_server/652.sql
inst/sql/sql_server/653.sql
inst/sql/sql_server/654.sql
inst/sql/sql_server/655.sql
inst/sql/sql_server/656.sql
inst/sql/sql_server/657.sql
inst/sql/sql_server/658.sql
inst/sql/sql_server/700.sql
inst/sql/sql_server/701.sql
inst/sql/sql_server/702.sql
inst/sql/sql_server/703.sql
inst/sql/sql_server/704.sql
inst/sql/sql_server/705.sql
inst/sql/sql_server/706.sql
inst/sql/sql_server/707.sql
inst/sql/sql_server/708.sql
inst/sql/sql_server/709.sql
inst/sql/sql_server/710.sql
inst/sql/sql_server/711.sql
inst/sql/sql_server/712.sql
inst/sql/sql_server/713.sql
inst/sql/sql_server/751.sql
inst/sql/sql_server/752.sql
inst/sql/sql_server/753.sql
inst/sql/sql_server/754.sql
inst/sql/sql_server/755.sql
inst/sql/sql_server/758.sql
inst/sql/sql_server/800.sql
inst/sql/sql_server/801.sql
inst/sql/sql_server/802.sql
inst/sql/sql_server/803.sql
inst/sql/sql_server/804.sql
inst/sql/sql_server/850.sql
inst/sql/sql_server/851.sql
inst/sql/sql_server/853.sql
inst/sql/sql_server/900.sql
inst/sql/sql_server/901.sql
inst/sql/sql_server/902.sql
inst/sql/sql_server/903.sql
inst/sql/sql_server/904.sql
inst/sql/sql_server/905.sql
inst/sql/sql_server/906.sql
inst/sql/sql_server/950.sql
inst/sql/sql_server/951.sql
inst/sql/sql_server/952.sql
inst/sql/sql_server/953.sql
inst/sql/sql_server/954.sql
inst/sql/sql_server/955.sql
inst/sql/sql_server/956.sql
inst/sql/sql_server/957.sql
inst/sql/sql_server/958.sql
inst/sql/sql_server/BulkFeatureExtraction.sql
inst/sql/sql_server/CohortCounts.sql
inst/sql/sql_server/CopyAndCensorCohorts.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateFeatureProportions.sql
inst/sql/sql_server/CreateInclusionStatsTables.sql
inst/sql/sql_server/GetFeatureProportions.sql
inst/sql/sql_server/strata/StratifyByAge.sql
inst/sql/sql_server/strata/StratifyByCohort.sql
inst/sql/sql_server/strata/StratifyByFollowUpTime.sql
inst/sql/sql_server/strata/StratifyByGender.sql
inst/sql/sql_server/strata/StratifyByIndex.sql
inst/sql/sql_server/strata/StratifyByLocation.sql
inst/sql/sql_server/strata/StratifyByRace.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDef.R
man-roxygen/CohortSetReference.R
man-roxygen/CohortSetSpecs.R
man-roxygen/CohortTable.R
man-roxygen/ConceptCounts.R
man-roxygen/Connection.R
man-roxygen/OracleTempSchema.R
man/IbdCharacterization-package.Rd
man/createBulkCharacteristics.Rd
man/createCohortTable.Rd
man/getCohortCharacteristics.Rd
man/getInclusionStatistics.Rd
man/getInclusionStatisticsFromFiles.Rd
man/instantiateCohortSet.Rd
man/preMergeDiagnosticsFiles.Rd
man/preMergeResultsFiles.Rd
man/uploadResults.Rd
man/writeBulkCharacteristics.Rd
renv.lock
