getInclusionStatisticsFromFiles: Get inclusion criteria statistics from files

In ohdsi-studies/IbdCharacterization: Characterization of Inflammatory Bowel Disease Patient Cohorts

Get inclusion criteria statistics from files

Description

Gets inclusion criteria statistics from files, as stored when using the ROhdsiWebApi::insertCohortDefinitionSetInPackage function with generateStats = TRUE.

Usage

getInclusionStatisticsFromFiles(
  cohortId,
  folder,
  cohortInclusionFile = file.path(folder, "cohortInclusion.csv"),
  cohortInclusionResultFile = file.path(folder, "cohortIncResult.csv"),
  cohortInclusionStatsFile = file.path(folder, "cohortIncStats.csv"),
  cohortSummaryStatsFile = file.path(folder, "cohortSummaryStats.csv"),
  simplify = TRUE
)

Arguments

cohortId	The cohort definition ID used to reference the cohort in the cohort table.
folder	The path to the folder where the inclusion statistics are stored.
cohortInclusionFile	Name of the inclusion table, one of the tables for storing inclusion rule statistics.
cohortInclusionResultFile	Name of the inclusion result table, one of the tables for storing inclusion rule statistics.
cohortInclusionStatsFile	Name of the inclusion stats table, one of the tables for storing inclusion rule statistics.
cohortSummaryStatsFile	Name of the summary stats table, one of the tables for storing inclusion rule statistics.
simplify	Simply output the attrition table?

Value

If simplify = TRUE, this function returns a single data frame. Else a list of data frames is returned.

ohdsi-studies/IbdCharacterization documentation built on July 26, 2024, 11:20 p.m.