Identification results from a bottom-up proteomics experiment. HeLa cell lysate was digested with LysC, and Trypsin using TFE digestion protocol on an AmiconUltra 10K, and the digest was analyzed on a Thermo LTQ-Orbitrap XL in data-dependent acquisition mode (top 3, orbitrap detector for MS1 at 60000 resolution, ion trap for MS2, and CID fragmentation with 35
An object of class
data.frame, with its rows corresponding to each peptide identifications. Its columns include
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