partitionScheme: Partition Scheme for a Concatenate Alignment
In oleon12/alignTools: Easy download and manage GenBank data, and alignments for phylogenetics.
Description
Usage
Arguments
Author(s)
See Also
Examples
View source: R/partitionScheme.R
Description
Shows a partition scheme for a concatenate alignment of N genes
Usage
1
partitionScheme(genes)
Arguments
genes
A list objecto with multiple alginments (DNAbin class)
Author(s)
Omar Daniel Leon-Alvarado
See Also
Examples
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library(alignTools)
data(Procyonidae)
head(Procyonidae, 5L)
genes <- multiGenBank(Procyonidae,TRUE,FALSE)
alignment <- multiMuscle(genes, write.dna=FALSE)
concat <- concatGenes(alignment, "?", FALSE)
partitionScheme(alignment)
oleon12/alignTools documentation built on March 17, 2021, 4:57 p.m.
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Description Usage Arguments Author(s) See Also Examples
View source: R/partitionScheme.R
Description
Shows a partition scheme for a concatenate alignment of N genes
Usage
1 | partitionScheme(genes)
|
Arguments
genes |
A list objecto with multiple alginments (DNAbin class) |
Author(s)
Omar Daniel Leon-Alvarado
See Also
Examples
1 2 3 4 5 6 7 8 9 10 11 | library(alignTools)
data(Procyonidae)
head(Procyonidae, 5L)
genes <- multiGenBank(Procyonidae,TRUE,FALSE)
alignment <- multiMuscle(genes, write.dna=FALSE)
concat <- concatGenes(alignment, "?", FALSE)
partitionScheme(alignment)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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