Description Usage Format Source References Examples
Global network of functionally linked gene families extracted from STRING 10.0 database. Only gene neighbor scores are used as evidence of functional association. Edges with original score less than 275 were removed, then weights (w) were unit normalized as follows: (w-275)/1000.
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A data frame with 3 variables: node1
gene family one, node2
gene family two,
weight
unit normalized gene neighbor score.
STRING 10.0 database http://string-db.org/.
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C. STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 2015 Jan; 43:D447-52.4.
Kamneva OK. Genome composition of microbes predicts their co-occurrence in the environment. In review.
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