Description Usage Arguments Value References See Also Examples
This function calculates presence and absence of gene families in each of the reference gene set in a genome from the list of gene family encoded in that genome.
1 | set_representation(families, gene_sets = reference_gene_sets)
|
families |
character vector of gene family names from STRING 10.0 present in first genome. |
gene_sets |
list of character vectors. Each individual vector represents a set of functionally associated gene families (or gene set) likely involved in the same function or process. |
Microbe-microbe functional association index for two genomes which encode families1
and families1
.
Kamneva OK. Genome composition of microbes predicts their co-occurrence in the environment. In review.
similarity
, similarity_by_set
.
1 2 | data(families_Bf)
sets_Bf = set_representation(families = families_Bf, gene_sets = reference_gene_sets)
|
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