Man pages for oliviermfmartin/HelpingHand
A helping hand
| BASiCS_ParallelMCMC | Parallelized BASiCS_MCMC |
| BASiCS_RegressionDE | Detection of genes with changes in expression using linear... |
| castToMatrix | Cast a data.table to a matrix |
| clusteredCorrplot | Correlation plot with dendograms |
| convertGene | Convert gene names |
| correctedCountsSVA | Matrix of batch corrected expression values |
| cutree2 | Cut a Tree into Groups of Data |
| gpca | GPCA |
| groupSparseEigen | Group-wise sparse spectral decomposition of a matrix |
| kFoldRsq | Cross validated R2 from linear models |
| overlap | Overlapping estimation |
| plotEnrichment | Plot enrichment results |
| plotGSEA | Plot GSEA results |
| reverselog_trans | Inverse log scale |
| rpca | RPCA |
| runEnrichment | Run enrichment analysis of a gene set for C. elegans |
| runGSEA | Run gene set enrichment analysis for C. elegans |
| signCorrectionPCA | Sign correction for principal component analysis |
| sleuth_to_count | Convert a sleuth object to count |
| sleuth_to_tpm | Convert a sleuth object to TPM |
