runGSEA: Run gene set enrichment analysis for C. elegans

In oliviermfmartin/HelpingHand: A helping hand

Description

Wrapper function around gseKEGG and gseGO.

Usage

runGSEA(
  geneList,
  keytype = "WORMBASE",
  nPerm = 50000L,
  pvalueCutoff = 1,
  use_internal_data = TRUE
)

Arguments

geneList	order ranked geneList
keytype	the keytype that matches the keys used. For the select methods, this is used to indicate the kind of ID being used with the keys argument. For the keys method this is used to indicate which kind of keys are desired from keys
nPerm	permutation numbers
pvalueCutoff	pvalue Cutoff
use_internal_data	logical, use KEGG.db or latest online KEGG data

Value

A list of gseaResult for KEGG and GO annotations.

oliviermfmartin/HelpingHand documentation built on Oct. 10, 2020, 5:59 a.m.