sleuth_to_tpm: Convert a sleuth object to TPM

In oliviermfmartin/HelpingHand: A helping hand

Description

Convert a sleuth object to a TPM matrix with the condition names.

Usage

sleuth_to_tpm(
  obj,
  log = TRUE,
  normalize = TRUE,
  pc = 0.5,
  aggregation_column = "wb"
)

Arguments

obj	sleuth object.
log	bool; should natural log be returned?
normalize	bool; should normalized counts be returned
pc	numeric; pseudo-counts
aggregation_column	character; aggregation column

Value

a matrix which contains a matrix of target_ids and transcript (or gene) expression in TPMs.

oliviermfmartin/HelpingHand documentation built on Oct. 10, 2020, 5:59 a.m.