Man pages for olli0601/PANGEA.HIV.sim
PANGEA.HIV.sim
| cmd.HPTN071.input.parser.v4 | Command line generator for 'HPTN071.input.parser.v2' |
| cmd.HPTN071.simulator | Command line generator for 'HPTN071.simulator' |
| cmd.SeqGen.createInputFiles | Command line generator for... |
| cmd.SeqGen.run | Command line generator for 'prog.PANGEA.SeqGen.run' |
| cmd.VirusTreeSimulator | Command line generator for the 'VirusTreeSimulator' |
| PANGEA.GTR.params | Create data.table of GTR parameters |
| PANGEA.RootSeq.create.sampler | Create starting sequence sampler |
| PANGEA.TransmissionEdgeEvolutionaryRate.create.sampler | Create sampler of Evolutionary Rates for transmission edges |
| PANGEA.WithinHostEvolutionaryRate.create.sampler.v1 | Create sampler of Within Host Evolutionary Rates |
| sim.regional | Simulate sequences and viral phylogenetic trees under the... |
| sim.regional.args | Input arguments to simulate sequences and viral phylogenetic... |
