Produce a single FastTree shell command on a bootstrap alignment.
1 2 3 4 | cmd.fasttree.many.bootstraps(infile.fasta, bs.dir, bs.n, outfile,
pr = PR.FASTTREE, pr.args = "-nt -gtr -gamma",
prog.bscreate = PR.EXAML.BSCREATE, opt.bootstrap.by = "nucleotide",
pr.supportadder = PR.RAXML, bs.from = NA, bs.to = NA)
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