API for olli0601/rBEAST
rBEAST

Global functions
beast.add.VDAnalysis Source code
beast.add.alignment Source code
beast.add.alignment.fromDNAbin Source code
beast.add.compoundParameter Source code
beast.add.deltaExchangeOperator Source code
beast.add.discretizedBranchRates Source code
beast.add.exponentialDistributionModel Source code
beast.add.exponentialPrior Source code
beast.add.fileLog Source code
beast.add.from.template Man page Source code
beast.add.gammaPrior Source code
beast.add.gmrfGridBlockUpdateOperator Source code
beast.add.gmrfSkyGridPrior Source code
beast.add.gmrfskygrid Source code
beast.add.gtrModel Source code
beast.add.hkyModel Source code
beast.add.likelihood Source code
beast.add.logNormalDistributionModel Source code
beast.add.logNormalPrior Source code
beast.add.logParameter Source code
beast.add.logTree Source code
beast.add.mcmc Source code
beast.add.monophylyStatistic.for.taxonsets Man page Source code
beast.add.operators Source code
beast.add.patterns Source code
beast.add.prior4tips Source code
beast.add.priors Source code
beast.add.rateStatistics Source code
beast.add.scaleOperator Source code
beast.add.screenLog Source code
beast.add.seq Source code
beast.add.siteModel Source code
beast.add.startingtree Man page Source code
beast.add.swapOperator Source code
beast.add.taxa Man page Source code
beast.add.taxonsets.for.clusters Source code
beast.add.taxonsets4tips Source code
beast.add.tmrcaStatistic.for.taxonsets Man page Source code
beast.add.treeLikelihood Source code
beast.add.treemodel Source code
beast.add.uniformIntegerOperator Source code
beast.add.uniformOperator Source code
beast.add.uniformPrior Source code
beast.add.upDownOperator Source code
beast.add.variableDemographic Source code
beast.adjust.gmrfSkyrideLikelihood Man page Source code
beast.adjust.mcmc Man page Source code
beast.adjust.prior.rootheight Man page Source code
beast.choose.seq.by.clusters Man page Source code
beast.get.sequences Source code
beast.get.startingtree Man page Source code
beast.get.taxonsets4tips Source code
beast.get.tipPrior Source code
beast.get.xml Source code
beast.pool.clusters Man page Source code
beast.pool.clusters.by.requiredseq.per.samplingperiod Source code
beast.pool.clusters.by.samplingtime Source code
beast.pool.clusters.by.samplingtime.alwaysincludebeforeyear Source code
beast.read.log Man page Source code
beast.read.log2tstem Source code
beast.read.ops Man page Source code
beast.set.SEQ Man page Source code
beast.set.TAXON_NAME Man page Source code
beast.set.fileNameTrunk Source code
beast.writeNexus4Beauti Source code
beast2.add.alignment Man page Source code
beast2.add.bdsky.serialpriors Man page Source code
beast2.add.cluster.taxonsets Man page Source code
beast2.add.data Man page Source code
beast2.add.datetrait Man page Source code
beast2.add.sasky.serialpriors Man page Source code
beast2.add.satree Man page Source code
beast2.add.startingtree.newick Man page Source code
beast2.add.startingtree.random Man page Source code
beast2.add.tiplogstem Man page Source code
beast2.add.tree Man page Source code
beast2.add.treemodel.bdsky Man page Source code
beast2.add.treemodel.sasky Man page Source code
beast2.extract.distinct.topologies Man page Source code
beast2.get.prior Man page Source code
beast2.get.specifications Man page Source code
beast2.get.xml Man page Source code
beast2.init.xml Man page Source code
beast2out.combine.clu.trees Man page Source code
beast2out.extract.cluster.trees Man page Source code
beast2out.get.log.evolrate Man page Source code
beast2out.plot.cluster.trees Man page Source code
beast2out.pool.cluster.trees Man page Source code
beast2out.read.nexus.and.stats Man page Source code
beast2out.read.nodeidtree Man page Source code
beast2out.read.nodestats Man page Source code
beast2out.read.trees Man page Source code
beast2out.tip.date.check Man page Source code
beastxml.from.template Man page Source code
beastxml.multilocus.codon.gtr Man page Source code
beastxml.multilocus.hky.fixed.topology Man page Source code
beastxml.multilocus.hky.fixed.tree Man page Source code
onAttach Source code
treeannotator.get.clusterprob Man page Source code
treeannotator.get.edgewidth Man page Source code
treeannotator.get.immu.timeline Man page Source code
treeannotator.get.phy Man page Source code
treeannotator.get.rates Man page Source code
treeannotator.get.tmrcas Man page Source code
treeannotator.get.viro.timeline Man page Source code
treeannotator.nodelabels.getnodeheightHPD Man page Source code
treeannotator.plot Man page Source code
treeannotator.plot.ctimeline Man page Source code
treeannotator.plot.hpdbars Man page Source code
treeannotator.plot.immu.timeline Man page Source code
treeannotator.plot.node.ctime Man page Source code
treeannotator.plot.rates Man page Source code
treeannotator.plot.seronodeheightrange Man page Source code
treeannotator.plot.tipmarks Man page Source code
treeannotator.plot.tipstem.timeline Man page Source code
treeannotator.plot.viro.timeline Man page Source code
treeannotator.read Man page Source code
treeannotator.sero.getnodeheight.range Man page Source code
treeannotator.tiplabel2df Man page Source code
olli0601/rBEAST documentation built on May 23, 2017, 8:01 p.m.