beast2out.read.trees: Extract a list of phylogenies from a BEAST2 posterior file
In olli0601/rBEAST: rBEAST

Description Usage Arguments Value Author(s) Examples

Extract a list of phylogenies from a BEAST2 posterior file

1	beast2out.read.trees(file, opt.rescale.edge.length = 1, opt.burnin = 0)

`file`	name of the BEAST2 posterior filename, usually ends with '.trees'
`opt.rescale.edge.length`	Rescaling factor of the phylogenies, a value of 1.0 denotes that the original edge lengths are maintained
`opt.burnin`	how many phylogenies to discard, an value of will keep all trees

a list of phylogenies of type 'phylo'

Oliver Ratmann

  trees_file <- "vignettes/example.trees"
  testit::assert(file.exists(trees_file))
  posterior <- beast2out.read.trees(trees_file)
  testit::assert(length(posterior) == 10)
  testit::assert(class(posterior[[1]]) == "phylo")