Man pages for omarwagih/rmimp
Predicting the impact of mutations on kinase-substrate phosphorylation
| bestSequence | Given a position weight matrix, find the best matching... |
| computeRewiring | Score wt and mt sequences for a pwm |
| degeneratePWM | Create a degenerate PWM i.e. for each aa group, set weight to... |
| dohtml | Helper function for 'results2html' |
| flankingSequence | Get flanking sequences of a position. |
| mimp | Predict the impact of single variants on phosphorylation. |
| mss | Compute matrix similarity score as described in MATCH... |
| predictKinasePhosphosites | Compute posterior probability of wild type phosphosites for... |
| pRewiringPosterior | Computing posterior probability - ploss and pgain |
| pSNVs | Find phosphorylation related variants (pSNVs) |
| PWM | Construct position weight matrix |
| results2html | Display MIMP results interactively in browser |
| scoreArrayFast | Get weight/probability for each amino acid in a sequence |
| unfactor | Converts all columns of a data frame of class factor to... |
| worstSequence | Given a position weight matrix, find the worst matching... |
