mss: Compute matrix similarity score as described in MATCH...
In omarwagih/rmimp: Predicting the impact of mutations on kinase-substrate phosphorylation
Description
Usage
Arguments
Examples
View source: R/pwm-functions.r
Description
Computes matrix similarity score of a PWM with a k-mer.
Score ranges from 0-1, as described in [PMID: 12824369]
Usage
1
mss(seqs, pwm, na_rm = F, ignore_cent = T)
Arguments
seqs
Sequences to be scored
pwm
Position weight matrix
na_rm
Remove NA scores?
ignore_cent
If TRUE, central residue is ignore from scoring.
Examples
1
# No Examples
omarwagih/rmimp documentation built on May 18, 2020, 3:11 p.m.
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Description Usage Arguments Examples
View source: R/pwm-functions.r
Description
Computes matrix similarity score of a PWM with a k-mer. Score ranges from 0-1, as described in [PMID: 12824369]
Usage
1 | mss(seqs, pwm, na_rm = F, ignore_cent = T)
|
Arguments
seqs |
Sequences to be scored |
pwm |
Position weight matrix |
na_rm |
Remove NA scores? |
ignore_cent |
If TRUE, central residue is ignore from scoring. |
Examples
1 | # No Examples
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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