Description Usage Arguments Examples
Given mutation data and psites, find variants that exist in the flanking regions of the psite
1 | pSNVs(md, pd, seqdata, flank = 7)
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flank |
Number of amino acids flanking the psite to be considered |
muts |
Mutation data as data frame of two columns (1) name of gene or protein (2) mutation in the format X123Y, where X is the reference amino acid and Y is the alternative amino acid. |
psites |
Phosphorylation data as a data frame of two columns (1) name of gene or protein (2) Position of the phosphorylated residue |
seqs |
Sequence data as a name list. Names of the list correspond to the gene or protein name. Each entry contains the collapsed sequence. |
1 | # No examples
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