jupyter/README.md
In ome/rOMERO-gateway: OMERO R Gateway
Jupyter server
Spin up a Jupyter server with Docker:
CD into this directory and run:
docker build -t romero .
(this will build the romero.gateway from the current ome/master branch)
Run the docker image:
docker run -it -p 8888:8888 romero
Go to the respective URL in your browser and open the Get_Started notebook in notebooks,
or create a new 'OMERO R' notebook from scratch!
Notes:
- If you want to build a specific version or branch use:
docker build -t romero --build-arg ROMERO_VERSION=0.4.5 .
docker build -t romero --build-arg ROMERO_BRANCH_USER=ome --build-arg ROMERO_BRANCH=master .
- The Dockerfile uses the install.R script from the master branch.
You can specify a different script with the INSTALL_SCRIPT_URL parameter.
ome/rOMERO-gateway documentation built on Nov. 5, 2023, 9:29 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Jupyter server
Spin up a Jupyter server with Docker:
CD into this directory and run:
docker build -t romero .
(this will build the romero.gateway from the current ome/master branch)
Run the docker image:
docker run -it -p 8888:8888 romero
Go to the respective URL in your browser and open the Get_Started notebook in notebooks,
or create a new 'OMERO R' notebook from scratch!
Notes:
- If you want to build a specific version or branch use:
docker build -t romero --build-arg ROMERO_VERSION=0.4.5 .
docker build -t romero --build-arg ROMERO_BRANCH_USER=ome --build-arg ROMERO_BRANCH=master .
- The Dockerfile uses the install.R script from the master branch.
You can specify a different script with the INSTALL_SCRIPT_URL parameter.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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