openanalytics/gread: Fast Reading and Processing of Common Gene Annotation and Next Generation Sequencing Format Files
It allows for fast reading and processing of genome read and annotation files such as gtf/gff/bed/bam. In addition, it also provides functions for advanced manipulations such as filling missing intron coordinates, extracting non-overlapping intron coordinates, extracting overlapping genes etc.
Getting started
Browse package contents
Package details |
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|---|---|
| Bioconductor views | Annotation Coverage DataImport RNASeq Sequencing Software |
| Maintainer | Arunkumar Srinivasan <asrinivasan@openanalytics.eu> |
| License | GPL-3 |
| Version | 0.99.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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