reduce_overlaps: Compute reduced ranges on a gtf/gff/bed/bam object.
In openanalytics/gread: Fast Reading and Processing of Common Gene Annotation and Next Generation Sequencing Format Files
Description
Usage
Arguments
Value
Description
For internal use only. Computes reduced ranges on a
gtf/gff/bed/bam object by converting the input object to a
GRangesList object and calling reduce() (from
GenomicRanges package) on it. Returns an object of same class
as input.
Usage
1
reduce_overlaps(x, by = "gene_id", ignore_strand = FALSE)
Arguments
x
An object of class gtf/gff/bed/bam.
by
Character vector of column names in x to group by.
ignore_strand
Logical argument to pass to GRanges function.
Indicates whether strand should be ignored when constructing
GRanges object or not. Default is FALSE.
Value
A data.table with reduced ranges.
openanalytics/gread documentation built on May 24, 2019, 2:29 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
For internal use only. Computes reduced ranges on a
gtf/gff/bed/bam object by converting the input object to a
GRangesList object and calling reduce() (from
GenomicRanges package) on it. Returns an object of same class
as input.
Usage
1 | reduce_overlaps(x, by = "gene_id", ignore_strand = FALSE)
|
Arguments
x |
An object of class |
by |
Character vector of column names in |
ignore_strand |
Logical argument to pass to |
Value
A data.table with reduced ranges.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.