Man pages for ornelles/virustiter
Virus Titer and Related Functions for Fluorescent Micrographs

addOneFitAdd Single Fitted Model to Plot
bnormalizeNormalize Image Background
cellMaskVoronoi Cell Segmentation from Nuclei
checkImagesCheck Paired Microscopic Images
edgeObjectsIdentify Objects along Edge of Image
findBgndFind Background Value by Otsu's method or a best guess
findObjectsFind Objects
getAICObtain AIC for Given Background Value
getBgndDetermine Background Value to Define Positive Samples
getCutoffGet cutoff values for nuclear mask area
getFitFit Infectivity Results with Binomial GLM Model
getImagesGet Paired Microscopic Images
getShiftDetermine Optimal Image Shift
getTiterGet Titer from Fitted Model
getValGet Value from ComputeFeatures.xxx Function
getZeroFind Baseline (Zero) Pixel Value
list.imagesList Image Files
mergePdataMerge Phenotype and Image Data
nucMaskGenerate Nuclear Mask from DNA Image
p2pInteractively Measure Point-to-Point Distances
parseImagesParse Paired Microscopic Images
plotDensShow Density Plot of Mean Fluorescence Intensity with...
plotFitPlot Titer Fit from GLM Model
plotHistShow Histogram of Mean Fluorescence Intensity with Background...
plotPlatePlot Results of an Entire Plate by Well or File
plotWellPlot Results by Well with Lattice Graphics
scoreScore Cells as Positive/Negative
setZeroNormalize Image to Given Zero Value
tallyTally Positive Fluorescent Values
thresh2Adaptive Threshold with a Moving Disc Window
translateLinear Spatial Translation
trimMaskRemove Objects by Size, Proximity to Edge and Eccentricity
usageShow Usage of 'virustiter' Package
well.infoExtract ID, Prefix, Well, Row and Column Label
ornelles/virustiter documentation built on March 15, 2024, 9:28 a.m.