addOneFit | Add Single Fitted Model to Plot |
bnormalize | Normalize Image Background |
cellMask | Voronoi Cell Segmentation from Nuclei |
checkImages | Check Paired Microscopic Images |
edgeObjects | Identify Objects along Edge of Image |
findBgnd | Find Background Value by Otsu's method or a best guess |
findObjects | Find Objects |
getAIC | Obtain AIC for Given Background Value |
getBgnd | Determine Background Value to Define Positive Samples |
getCutoff | Get cutoff values for nuclear mask area |
getFit | Fit Infectivity Results with Binomial GLM Model |
getImages | Get Paired Microscopic Images |
getShift | Determine Optimal Image Shift |
getTiter | Get Titer from Fitted Model |
getVal | Get Value from ComputeFeatures.xxx Function |
getZero | Find Baseline (Zero) Pixel Value |
list.images | List Image Files |
mergePdata | Merge Phenotype and Image Data |
nucMask | Generate Nuclear Mask from DNA Image |
p2p | Interactively Measure Point-to-Point Distances |
parseImages | Parse Paired Microscopic Images |
plotDens | Show Density Plot of Mean Fluorescence Intensity with... |
plotFit | Plot Titer Fit from GLM Model |
plotHist | Show Histogram of Mean Fluorescence Intensity with Background... |
plotPlate | Plot Results of an Entire Plate by Well or File |
plotWell | Plot Results by Well with Lattice Graphics |
score | Score Cells as Positive/Negative |
setZero | Normalize Image to Given Zero Value |
tally | Tally Positive Fluorescent Values |
thresh2 | Adaptive Threshold with a Moving Disc Window |
translate | Linear Spatial Translation |
trimMask | Remove Objects by Size, Proximity to Edge and Eccentricity |
usage | Show Usage of 'virustiter' Package |
well.info | Extract ID, Prefix, Well, Row and Column Label |
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