plotDens | R Documentation |
Display a densityplot
of each well or file with lattice
graphics showing the selected background cutoff values.
plotDens(
df,
bgnd,
param = "mfi",
panel,
adjust = 1,
log = TRUE,
by = NULL,
mult = NULL,
main = NULL,
as.table = TRUE,
layout = NULL,
...
)
df |
Annotated |
bgnd |
Numeric vector of background values. If missing, |
param |
Character string identifying the variable to be analyzed. Also
passed to |
panel |
Optional character string defining the |
adjust |
Numeric value controlling bandwith, passed to the
|
log |
Optional |
by , mult |
Additional parameters passed to |
main |
Optional character string to serve as plot title. If |
as.table |
A |
layout |
An optional numeric vector to specify layout of densityplot,
passed to |
... |
Additional arguments passed to |
A densityplot of image intensity in 'param'
is plotted
with the selected background cutoff similar to the function
plotHist
. Both functions can be used to examine the uniformity
of results from an imaging experiment and to interactively check the
paramaters passed to getBgnd
to determine a suitable background
cutoff value. The background values are incorporated into the strip labels.
The plot is returned as an invisible lattice
object.
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