Man pages for oucru-biostats/C306
Collection of useful R codes for data analysis from the Biostatistics group at OUCRU
| as_sstable | Coerce an object to sstable |
| contSummary | Calculate summary statistics for continuous variable |
| convert.info | Convert imported OUCRU's data dictionary into a general data... |
| createProject | Create project's folder based on pre-defined folder structure |
| explicit | Transform an object to its explicit form |
| explicit.lm | Transform a model to its explicit form |
| ft_sstheme | Flextable theming for sstable |
| getlabel | Obtain label of variable(s) based on metadata information |
| gg_ajsurvplot | Plot the Aalen-Johansen curve with ggplot for competing risks |
| gg_ajsurvplot2 | Plot 2 Aalen-Johansen curves with ggplot for competing risks |
| gg_boxcox | Compute and draw Box-Cox transformation plot for linear... |
| ggsurvfit2 | ggsurvfit with strata saved |
| ht_theme_kable | A kable-esque theme for huxtable object |
| ht_theme_markdown | A stripe theme for huxtable object |
| import.info | Import OUCRU's data dictionary into R |
| inspect.data | Check formatted data based on a pre-defined information |
| labAE | Identify new lab adverse event to report |
| logist_summary | An alternative summary for a logistic model with OR, CI, and... |
| mutate_f | Create or transform variables, with support for multiple... |
| myformat.data | Format data based on pre-defined information |
| pct | Get the proportion for each level or range of a vector |
| print.logist_summary | Print method for logist_summary |
| print.subgroup_logist_summary | Print method for subgroup_logist_summary |
| rbind.ss_obj | Row-binding two sstables |
| ref_lv | Get or set the reference level |
| simple_recode | Do a simple recode via pattern for data |
| simple_relevel | Relevel in correspondence to another factor |
| simple_sort | Sort a vector in a user-defined order |
| ss_body | Designation of body part for custom sstable |
| ss_flextable | Create summary table using flextable package. |
| ss_format | Quick format a sstable in preparation for create... |
| ss_header | Designation of header rows for custom sstable |
| ss_huxtable | Create summary table using huxtable package. |
| ss_section | Designation of section title rows for custom sstable |
| sstable.ae | Create an adverse event summary table |
| sstable.baseline | Create baseline table |
| sstable.baseline.edit | Create baseline table |
| sstable.survcomp | Summarize results for a Cox survival model or restricted mean... |
| sstable.survcomp.subgroup | Summarize results for a survival model by treatment arm and... |
| ss_template | Set template for sstable |
| subgroup_effect | Calculation of covariable effects within each value of... |
| summarise_f | Reduce multiple values by summarisation functions. |
| tidy_competingevent | Tidy competing risk mstate survival fit. |
| tidy_survfit2 | Tidy survfit with strata save |
| t.subgroup_logist_summary | Transpose a subgroup logist summary table |
| untidy_strata | Untidy the tidy_survfit |
