sstable.baseline: Create baseline table

In oucru-biostats/C306: Collection of useful R codes for data analysis from the Biostatistics group at OUCRU

Create baseline table

Description

A function to create a simple summary baseline table.

Usage

sstable.baseline(
  formula,
  data,
  bycol = TRUE,
  pooledGroup = FALSE,
  keepEmptyGroup = FALSE,
  statistics = "mean, median (Q1-Q3)",
  cont = NULL,
  cate = NULL,
  fullfreq = TRUE,
  digits = 1,
  test = FALSE,
  pdigits = 3,
  pcutoff = 1e-04,
  chisq.test = FALSE,
  correct = FALSE,
  simulate.p.value = FALSE,
  B = 2000,
  workspace = 1e+06,
  hybrid = FALSE,
  footer = NULL,
  flextable = FALSE,
  bg = "#F2EFEE",
  df = FALSE
)

Arguments

formula	a formula specifies variables for rows, variable for column and third-dimension variable. If formula is in the form of x+y ~ a, the function will summary x and y with respects to each value of a If formula is in the form of x+y ~ a|z, the function will summary z with respects to each value of a,x and a, y
data	a data frame to derive baseline table from.
bycol	a logical value specifies whether the summary will be by column or by row.
pooledGroup	a logical value specifies whether to pool all subgroups of column variable.
keepEmptyGroup	a logical value specifying whether should keep empty groups
statistics	a character specifies summary statistics for continuous row variables.
cont	a vector specifies whether each row variables is continuous.
cate	a vector specifies whether each row variables is categorical.
digits	a number specifies number of significant digits for numeric statistics.
test	a logical value specifies whether a statistical test will be performed to compare between treatment arms.
pdigits	a number specifies number of significant digits for p value.
pcutoff	a number specifies threshold value of p value to be displayed as "< pcutoff".
chisq.test	a logical value specifies whether Chi-squared test or Fisher's exact test will be used to compare between treatment arms.
correct	a parameter for chisq.test().
simulate.p.value	a parameter for chisq.test() and fisher.test().
B	a parameter for chisq.test() and fisher.test().
workspace	a parameter for fisher.test().
hybrid	a parameter for fisher.test().
footer	a vector of strings to be used as footnote of table.
flextable	a logical value specifies whether output will be a flextable-type table.
bg	a character specifies color of the odd rows in the body of flextable-type table.
df	a logical values specifies whether output will be a draw dataframe.

Value

a flextable-type table or a list with values/headers/footers

oucru-biostats/C306 documentation built on Sept. 1, 2024, 10:04 a.m.