dx_plot_pr: Plot Precision-Recall Curve

In overdodactyl/diagnosticSummary: Diagnostic Summaries

Plot Precision-Recall Curve

Description

Plots a Precision-Recall (PR) curve from a dx object. The PR curve is a useful tool for evaluating the performance of a binary classification model, especially in situations where classes are imbalanced. It shows the trade-off between precision and recall for different thresholds.

Usage

dx_plot_pr(dx_obj)

Arguments

dx_obj

A dx object containing diagnostic measurements, including a data frame with sensitivity (recall) and precision values at various thresholds.

Details

The PR curve is a plot that demonstrates the relationship between precision (the proportion of true positive predictions among all positive predictions) and recall (the proportion of true positive predictions among all actual positives), for each possible cut-off threshold. A model with perfect performance would show a line that reaches the top-right corner of the plot, indicating both high precision and recall. The area under the PR curve (AUPRC) can also be used as a summary measure of the model performance, with higher values indicating better performance. This function generates the curve without calculating the area; separate functions should be used if AUPRC is required.

Value

A ggplot object representing the PR curve, which can be further customized as needed.

Examples

dx_obj <- dx(
  data = dx_heart_failure,
  true_varname = "truth",
  pred_varname = "predicted",
  outcome_label = "Heart Attack",
  setthreshold = .3
)
dx_plot_pr(dx_obj)

overdodactyl/diagnosticSummary documentation built on Jan. 28, 2024, 10:07 a.m.