get_gene_list: Get gene list

In ovrhuman/HPOExplorer: Analysis and Visualisation of the Human Phenotype Ontology

Description

This function returns a vector of genes associated with a particular phenotype. It uses the phenotype_to_genes.txt file from the hpo.

Usage

get_gene_list(phenotype, phenotype_to_genes)

Arguments

phenotype	A phenotype (name) from the HPO (e.g. "Phenotypic abnormality") <string>
phenotype_to_genes	The phenotype_to_genes.txt file from HPO that contains gene annotations for HPO phenotypes.

Value

a character vector of genes associated with the selected phenotype.

ovrhuman/HPOExplorer documentation built on Dec. 22, 2021, 5:21 a.m.