make_network_object: Make network object
Description Usage Arguments Details Value Examples
Description
This uses the network package to coerce the adjacency matrix into a network object. It also adds the fold change, label, and relative ontology level parameters to each node in the network.
Usage
1 | make_network_object(phenos, adjacency, hpo, colour_column = "fold_change")
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Arguments
phenos |
dataframe of phenotypes and values/ parameters. |
adjacency |
adjacency matrix (see ?adjacency_matrix) <matrix> |
hpo |
The HPO ontology data object |
colour_column |
The column from phenos that you wish to map to node colour |
Details
It expects there to be a column of HPO IDs in the phenos dataframe called HPO_Id.
Value
A ggnetowrk graph/ network object of a subset of the RD EWCE results.
Examples
1 | ## Not run: make_network_object(phenos,adjacency,hpo, colour_column = "fold_change")
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