Files in oxford-pharmacoepi/CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use

.Rbuildignore

.github/.gitignore

.github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

CRAN-SUBMISSION

CodelistGenerator.Rproj

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/CodelistFromCodelistWithDetails.R R/CodelistGenerator-package.R R/buildAchillesTables.R R/checks.R R/codesFromConceptSet.R R/codesInUse.R R/compareCodelists.R R/documentation_helper.R R/drugCodes.R R/getCandidateCodes.R R/getDoseUnit.R R/getICD10StandardCodes.R R/getMappings.R R/getRoutes.R R/helperFunctions.R R/mockVocabRef.R R/reexports.R R/runSearch.R R/stratifyByConcept.R R/stratifyByDoseUnit.R R/stratifyByRoute.R R/subsetOnDomain.R R/subsetOnDoseUnit.R R/subsetOnRouteCategory.R R/summariseAchillesCodeUse.R R/summariseCodeUse.R R/summariseOrphanCodes.R R/summariseUnmappedCodes.R

R/sysdata.rda

R/tableAchillesCodeUse.R R/tableCodeUse.R R/tableUnmappedCodes.R R/vocabUtilities.R README.Rmd README.md

_pkgdown.yml

codecov.yml

cran-comments.md

data-raw/dose_form_to_route.csv

data-raw/internalData.R

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/README.knit.html

docs/articles/Introduction_to_CodelistGenerator.html

docs/articles/Introduction_to_CodelistGenerator_files/crosstalk-1.2.0/css/crosstalk.min.css

docs/articles/Introduction_to_CodelistGenerator_files/crosstalk-1.2.0/js/crosstalk.js

docs/articles/Introduction_to_CodelistGenerator_files/crosstalk-1.2.0/js/crosstalk.js.map

docs/articles/Introduction_to_CodelistGenerator_files/crosstalk-1.2.0/js/crosstalk.min.js

docs/articles/Introduction_to_CodelistGenerator_files/crosstalk-1.2.0/js/crosstalk.min.js.map

docs/articles/Introduction_to_CodelistGenerator_files/crosstalk-1.2.0/scss/crosstalk.scss

docs/articles/Introduction_to_CodelistGenerator_files/datatables-binding-0.21/datatables.js

docs/articles/Introduction_to_CodelistGenerator_files/datatables-css-0.0.0/datatables-crosstalk.css

docs/articles/Introduction_to_CodelistGenerator_files/dt-core-1.11.3/css/jquery.dataTables.extra.css

docs/articles/Introduction_to_CodelistGenerator_files/dt-core-1.11.3/css/jquery.dataTables.min.css

docs/articles/Introduction_to_CodelistGenerator_files/dt-core-1.11.3/js/jquery.dataTables.min.js

docs/articles/Introduction_to_CodelistGenerator_files/htmlwidgets-1.5.4/htmlwidgets.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/clean_words.html

docs/reference/figures/README-pressure-1.png

docs/reference/get_candidate_codes.html

docs/reference/index.html

docs/reference/show_mappings.html

docs/sitemap.xml

inst/WORDLIST

inst/cohorts_for_mock/oa_desc.json

inst/cohorts_for_mock/oa_no_desc.json

inst/cohorts_for_mock_dups/oa_desc.json

inst/cohorts_for_mock_dups/oa_no_desc.json

inst/cohorts_for_mock_with_exclude/oa_desc.json

inst/cohorts_for_mock_with_mapped/oa_desc.json

inst/cohorts_for_mock_with_mapped/oa_no_desc.json

inst/concepts_dbms/oa_desc.json

inst/concepts_dbms/oa_no_desc.json

inst/concepts_for_mock/arthritis_desc.json

inst/concepts_for_mock/arthritis_no_desc.json

inst/concepts_for_mock/arthritis_with_excluded.json

inst/concepts_for_mock_with_exclude/oa_desc.json

inst/concepts_for_mock_with_exclude/oa_with_excluded.json

inst/concepts_for_mock_with_exclude/oa_with_excluded2.json

inst/concepts_for_mock_with_mapped/oa_desc.json

inst/concepts_for_mock_with_mapped/oa_with_mapped.json

man/CodelistGenerator-package.Rd man/ageGroupDoc.Rd man/availableATC.Rd man/availableICD10.Rd man/availableIngredients.Rd man/buildAchillesTables.Rd man/byConceptDoc.Rd man/bySexDoc.Rd man/byYearDoc.Rd man/cdmDoc.Rd man/codesFromCohort.Rd man/codesFromConceptSet.Rd man/codesInUse.Rd man/compareCodelists.Rd man/countByDoc.Rd man/domainDoc.Rd man/doseFormDoc.Rd man/doseUnitDoc.Rd man/dot-optionsDoc.Rd

man/figures/README-unnamed-chunk-8-1.png

man/figures/logo.png

vignettes/.gitignore

vignettes/Figures/1.png

vignettes/Figures/10.png

vignettes/Figures/11.png

vignettes/Figures/2.png

vignettes/Figures/3.png

vignettes/Figures/4.png

vignettes/Figures/5.png

vignettes/Figures/6.png

vignettes/Figures/7.png

vignettes/Figures/8.png

vignettes/Figures/9.png

vignettes/a01_GettingOmopCdmVocabularies.Rmd vignettes/a02_ExploreCDMvocabulary.Rmd vignettes/a03_GenerateCandidateCodelist.Rmd vignettes/a04_GenerateVocabularyBasedCodelist.Rmd vignettes/a04b_icd_codes.Rmd vignettes/a05_ExtractCodelistFromJSONfile.Rmd vignettes/a06_CreateSubsetsFromCodelist.Rmd vignettes/a07_RunCodelistDiagnostics.Rmd

oxford-pharmacoepi/CodelistGenerator documentation built on June 9, 2025, 9:38 a.m.

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oxford-pharmacoepi/CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use

Files in oxford-pharmacoepi/CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use

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oxford-pharmacoepi/CodelistGenerator Identify Relevant Clinical Codes and Evaluate Their Use

Files in oxford-pharmacoepi/CodelistGenerator Identify Relevant Clinical Codes and Evaluate Their Use

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oxford-pharmacoepi/CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use

Files in oxford-pharmacoepi/CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use