codesFromConceptSet: Get concept ids from a provided path to json files

In oxford-pharmacoepi/CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use

Get concept ids from a provided path to json files

Description

Get concept ids from a provided path to json files

Usage

codesFromConceptSet(path, cdm, type = c("codelist"))

Arguments

path	Path to a file or folder containing JSONs of concept sets
cdm	A cdm reference created with CDMConnector
type	Can be "codelist", "codelist_with_details", or "concept_set_expression"

Value

Named list with concept_ids for each concept set

Examples

## Not run: 
cdm <- mockVocabRef("database")
x <- codesFromConceptSet(cdm = cdm,
                         path =  system.file(package = "CodelistGenerator",
                         "concepts_for_mock"))
x
CDMConnector::cdmDisconnect(cdm)

## End(Not run)

oxford-pharmacoepi/CodelistGenerator documentation built on July 18, 2024, 6:29 a.m.