benth.met: Benthic Metric Calculation

In p-schaefer/BenthicAnalysis: Benthic Analysis with Test Site Anlysis

Benthic Metric Calculation

Description

Calculation of a variety of metrics for determing impairment of Benthic Macroinvertebrate Communities.

Usage

benth.met(x, tax.fields = 2, site.fields, HBI = NULL)

Arguments

x	data.frame with sampling events in rows and taxa in columns. No row or column names should be defined
tax.fields	The number of rows in x used for taxa names (will be concatenated in output)
site.fields	The number of columns in x used for site names (will be concatenated in output)
HBI	Custom sensitivity values for HBI calculation. Must follow format of data(HBI1,envir = environment())

Value

$Summary.Metrics - Calculated indicator metrics

$Raw.Data - Raw taxon data

$Taxa.List - Concatenated taxon names

$Site.List - Concatenated site names

Examples

data(YKBioData,envir = environment())
benth.met(YKBioData,2,2)

p-schaefer/BenthicAnalysis documentation built on May 3, 2023, 5:49 a.m.