plot_timeseries: Plot time series data from an MSE or OM simulation run
In pacific-hake/pacifichakemse: Management Strategy Evaluation of Pacific Hake

plot_timeseries

R Documentation

Plot time series data from an MSE or OM simulation run

Description

Plot time series data from an MSE or OM simulation run

Usage

plot_timeseries(
  ps = NULL,
  type = "ssb",
  time = "mid",
  ci = c(0.05, 0.95),
  by_country = FALSE,
  yr_lim = c(NA_real_, NA_real_),
  ylim = c(NA_real_, NA_real_),
  ci_lines = TRUE,
  show_ci = TRUE,
  show_ssb0 = TRUE,
  show_hcr = TRUE,
  show_hcr_values = TRUE,
  show_y_values = TRUE,
  rev_scenarios = FALSE,
  legend_position = c(0.26, 0.85),
  ssb_line_txt_cex = 0.8,
  ssb_line_col = "black",
  ssb_line_type = 2,
  ...
)

Arguments

`ps`	A plot setup object as output by `setup_mse_plot_objects()`.
`type`	One of 'ssb', 'ssb_ssb0', catch', 'recr', aas', 'aac','aap'
`time`	Either 'beg' for beginning of the year SSB or 'mid' for mid-year SSB. Only used if `type` is 'ssb' or 'ssb_ssb0'.
`ci`	A vector of length two of the lower and upper credible interval values.
`by_country`	If `TRUE`, the plot will be N panels of plots comparing the scenarios by country. N is the number of scenarios. If `FALSE` the plot will be one panel comparing the scenarios.
`yr_lim`	A vector of 2 for minimum and maximum yrs to show on the plot. If either are NA, the limits of the data are used.
`ylim`	A vector of 2 for limits of the y-axis. If either are NA, the limits of the data are used.
`ci_lines`	If `TRUE`, use dashed lines for the CI envelope. If `FALSE`, use a shaded ribbon.
`show_ci`	If `TRUE`, show the confidence interval, if `FALSE`, only show the median
`show_ssb0`	If `TRUE`, show the initial biomass, SSB0 line. Only used if `type` is 'ssb' or 'ssb_ssb0'.
`show_hcr`	If `TRUE`, show the 0.4 initial biomass and 0.1 initial biomass lines. Only used if `type` is 'ssb' or 'ssb_ssb0'.
`show_hcr_values`	If `TRUE`, show the SSB values for the HCR lines in the margin Only used if `type` is 'ssb' or 'ssb_ssb0'.
`show_y_values`	If `TRUE`, show the Y-axis values
`rev_scenarios`	If `TRUE`, reverse the order of the scenarios in the legend.
`legend_position`	A vector of two - X and Y position for the legend. See `ggplot2::theme()`
`ssb_line_txt_cex`	Size multiplier for SSB reference point line labels.
`ssb_line_col`	Color for SSB reference point line labels.
`ssb_line_type`	Line type for SSB reference point line labels.
`...`	Extra arguments to pass to `color_facet_backgrounds()`