run_mses: Run the MSE for a number of runs for any scenarios
In pacific-hake/pacifichakemse: Management Strategy Evaluation of Pacific Hake

run_mses

R Documentation

Run the MSE for a number of runs for any scenarios

Description

Run the MSE for a number of runs for any scenarios

Usage

run_mses(
  n_runs = 10,
  n_sim_yrs = NULL,
  fns = NULL,
  plot_names = NULL,
  tacs = c(0, 1),
  attains = c(1, 1),
  c_increases = 0,
  m_increases = 0,
  sel_changes = 0,
  n_surveys = 2,
  b_futures = 0.5,
  random_seed = 12345,
  single_seed = NULL,
  results_root_dir = here("results"),
  results_dir = here("results", "default"),
  catch_floor = NULL,
  hcr_apply = FALSE,
  ...
)

Arguments

`n_runs`	Then number of runs to do for each simulation
`n_sim_yrs`	The number of years to simulate into the future
`fns`	A vector of file names for the scenarios (.rds files). .rds extension is optional
`plot_names`	A vector of strings to use for the scenarios later when plotting. Must either be `NULL` or the same length as `fns`
`tacs`	A vector of TAC values to be passed to the `run_mse_scenario()` function, in the same order as the `fns` file names, or a single value
`attains`	A vector of 2, in the order Canada, US for proportion of catch to include
`c_increases`	Increase in max movement. A vector of values to be passed to the `run_mse_scenario()` function, in the same order as the `fns` file names, or a single value which will be used for all scenarios
`m_increases`	Decrease of spawners returning south. A vector of values to be passed to the `run_mse_scenario()` function, in the same order as the `fns` file names, or a single value which will be used for all scenarios
`sel_changes`	Selectivity scenario change type. A vector of values to be passed to the `run_mse_scenario()` function, in the same order as the `fns` file names, or a single value which will be used for all scenarios
`n_surveys`	The number of surveys for each run. This must be a vector of the same length as `fns` or `NULL`. If `NULL`, 2 will be used for every scenario
`b_futures`	A vector of values to be passed to the `run_mse_scenario()` function for bias adjustment into the future, in the same order as the `fns` file names, or a single value which will be used for all scenarios
`random_seed`	A seed value to use when calling for all random functions
`single_seed`	If NULL, ignore. If a number, use that as a seed to run a single run of the MSE. User for testing.
`results_root_dir`	The results root directory
`results_dir`	The results directory
`catch_floor`	The lowest value to allow catch to drop to when applying the tac rule for the catch floor
`...`	Arguments passed to `load_data_om()`