run_season_loop_om: Run the Operating model for all seasons and spaces in one...
In pacific-hake/pacifichakemse: Management Strategy Evaluation of Pacific Hake

run_season_loop_om

R Documentation

Run the Operating model for all seasons and spaces in one year

Description

Run the Operating model for all seasons and spaces in one year

Usage

run_season_loop_om(
  om,
  yr,
  yr_ind,
  m_season,
  attain = c(1, 1),
  zero_catch_val = 2000,
  ages_no_move = c(0, 1),
  pope_mul = 0.5,
  hcr_apply = FALSE,
  verbose = TRUE,
  testing = FALSE,
  const_catch = FALSE,
  ...
)

Arguments

`om`	See `run_om()`
`yr`	The year to run the operating model for
`yr_ind`	The index of `yr` in the `om$yrs` vector
`m_season`	A vector of natural mortality-at-age
`attain`	The attainment vector of length 2, in the order Canada, US. These are proportions of the catch to take.
`zero_catch_val`	The value to use instead of zero for catch (necessary for EM to converge)
`ages_no_move`	Ages that don't move in the movement model
`pope_mul`	Multiplier used in Pope's method
`hcr_apply`	If `TRUE`, apply the Harvest control rule inside the Operating model. Set to `FALSE` when running MSE as the HCR is already applied
`verbose`	Print the loop information to the console
`testing`	Logical. If TRUE, write out testing files
`const_catch`	If `TRUE` make the catch constant for the projection period. `catch_in` still needs to be set to some value when running `run_oms()`
`...`	Absorbs additional arguments meant for other functions