knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "README-" )
MicrobioUoE is an R package built to allow sharing of R code and functions between the lab groups of Angus Buckling and Edze Westra. As we do very similar analyses and use similar code, this should act as an easy way to share R code.
For problems and suggestions please email Daniel Padfield d.padfield@exeter.ac.uk
Installation of packages from GitHub is relatively straightforward.
# firstly need to make sure devtools is installed install.packages('devtools') # install MicrobioUoE devtools::install_github('padpadpadpad/MicrobioUoE')
bind_biolog_sheet()
bind_biolog_all()
filename <- '~/Desktop/biolog_data.xlsx' sheets <- paste0('S', 1:10, sep = '') MicrobioUoE::bind_biolog_all(filename, sheets)
MicrobioUoE::stock_sol_vol(stock_sol_conc = 0.75, new_sol_conc = 0.2, new_sol_vol = 1000)
MicrobioUoE::calc_norm_OD('first_OD_readings.csv', 'df_volumes.csv', new_sol_conc = 0.1, new_sol_vol = 1000, control = 0.035)
MicrobioUoE::moveRmdOutput('~/Desktop/My_experiment/Rmd_path', '~/Desktop/My_experiment/Output_path')
cran_packages <- c('dplyr', 'ggplot2', 'tidyr') github_packages <- c('padpadpadpad/nlsLoop') bioc_packages <- c('phangorn') MicrobioUoE::package_install_all(cran_packages, github_packages, bioc_packages)
If you have a piece of code you use regularly or a set of functions you use all the time and would like to integrate those into this package for others to use as well, please email at the address above or comment on the Issues tab.
Alternatively come find me for a chat about how I can help.
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