package_install_all: package_install_all

In padpadpadpad/MicrobioUoE: R package for making our life easier

Description

installs all necessary packages from cran, github and bioconductor

Usage

package_install_all(
  cran_packages = NULL,
  github_packages = NULL,
  bioc_packages = NULL
)

Arguments

cran_packages	a list of packages to install from CRAN
github_packages	a list of packages to install from GitHub
bioc_packages	a list of packages to install from Bioconductor

Details

if only CRAN packages are needed then you can only supply a list of those as desired. The function assumes remotes it is used to install packages from GitHub. In addition BiocManager is used to install packages from Bioconductor. Bioconductor will need to be downloaded before this will work https://www.bioconductor.org/install/

Value

if all packages are installed successfully, the function will return 'Huzzah all the packages are installed'. If not it will return the list of packages that have not been installed

Examples

cran_packages = c('dplyr')
github_packages = c('padpadpadpad/nlsLoop')
package_install_all(cran_packages, github_packages)

padpadpadpad/MicrobioUoE documentation built on April 6, 2020, 6:28 p.m.