Files in pamelaglopez/hTF_array
Analysis of CoRec and hTF Array Data
DESCRIPTION
NAMESPACE
R/corecmotif-class.R
R/corecmotif_dataframe.R
R/fluorescence_matrix.R
R/full_pipeline.R
R/motif_comparisons.R
R/motif_plots.R
R/motif_scores.R
R/negative_motifs.R
R/unused_functions.R
R/utils-pipe.R
R/zscore_matrix.R
R/zscore_motifs.R
README.md
example_data/JASPAR2018_hTF_only.meme
example_data/data_matrices/hTF_v1_SUDHL4_14jan21_br.dat
example_data/data_matrices/hTF_v1_SUDHL4_14jan21_o1.dat
example_data/data_matrices/hTF_v1_SUDHL4_14jan21_o2.dat
example_data/data_matrices/hTF_v1_SUDHL4_14jan21_or.dat
example_data/hTF_v01_PBM_ANNOT.txt
example_data/motif_clusters.tsv
example_data/v1_a11_run1_exp.txt
example_run.R
hTFArrayAnalysis.Rproj
hTF_array_app/Data/JASPAR2018_hTF_only.meme
hTF_array_app/HTF_V01_020520_FULL_ANNOT_v1_a1_run1_ZSCORES.dat
hTF_array_app/README.md
hTF_array_app/app.R
hTF_array_app/hTF_v01_nextPBM_design.R
hTF_array_app/screenshots/1_data_upload.png
hTF_array_app/screenshots/2_data_dialog_box.png
hTF_array_app/screenshots/3_data_explorer.png
hTF_array_app/screenshots/4_scatterplots.png
hTF_array_app/screenshots/4_scatterplots_family_level.png
hTF_array_app/screenshots/5_motif_grid.png
hTF_array_app/screenshots/6_recruitment_heatmap.PNG
hTF_array_app/screenshots/hTF_design.PNG
man/annotate_fluorescence_matrix.Rd
man/corecmotif.Rd
man/extract_corecmotifs.Rd
man/fluorescence_to_zscore_matrix.Rd
man/identify_motif_match.Rd
man/pipe.Rd
man/plot_corecmotif.Rd
man/read_fluorescence_matrices.Rd
man/run_full_analysis.Rd
