identify_motif_match: Title
In pamelaglopez/hTF_array: Analysis of CoRec and hTF Array Data
View source: R/motif_comparisons.R
Description
Identifies the reference motif that is the best match to the corecmotif and
calculates a p-value for that match.
Usage
1
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9
identify_motif_match(
corec_motif,
reference_motifs_file,
cluster_assignments = NULL,
min_overlap = 5,
method = c("ed", "allr", "pearson", "sandelin", "kullback", "blic1", "blic5", "llr1",
"llr5"),
meme_path = "/share/pkg.7/meme/5.3.3/install/bin/"
)
Arguments
method
pamelaglopez/hTF_array documentation built on Feb. 23, 2022, 12:05 a.m.
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View source: R/motif_comparisons.R
Description
Identifies the reference motif that is the best match to the corecmotif and calculates a p-value for that match.
Usage
1 2 3 4 5 6 7 8 9 | identify_motif_match(
corec_motif,
reference_motifs_file,
cluster_assignments = NULL,
min_overlap = 5,
method = c("ed", "allr", "pearson", "sandelin", "kullback", "blic1", "blic5", "llr1",
"llr5"),
meme_path = "/share/pkg.7/meme/5.3.3/install/bin/"
)
|
Arguments
method |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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