| absolute_angle | Return the smallest possible angle between two compass... |
| add_dates | Add turtle dates to a dataframe with datetime col... |
| add_hatching_emergence_success_odkc | Add calculated egg count, hatching and emergence success to... |
| add_nest_labels | Add labels for species and nest/track type to parsed... |
| add_nest_labels_odkc | Add labels for species and nest/track type to parsed... |
| build_auth | Build token or basic authentication based on given... |
| datetime_as_isoweek | Calculate the isoweek from a given datetime |
| datetime_as_season | Calculate the "turtle season" (FY) from a given datetime |
| datetime_as_seasonweek | Calculate the isoweek from a given datetime |
| datetime_as_turtle_date | Calculate the "turtle date" from a given datetime |
| disturbance_by_season | Tally WAStD disturbances by season, cause, and encounter type |
| download_minimal_wastd_turtledata | Download a minimal dataset of turtle observations from WAStD |
| download_odkc_turtledata_2020 | Download all turtle data from DBCA's ODK Central 2020 |
| download_w2_data | Download Turtle Tagging data from WAMTRAM2. |
| download_wastd_sites | Download Areas of type Site from WAStD |
| download_wastd_turtledata | Download all turtle data from WAStD |
| download_wastd_users | Download a minimal dataset of turtle observations from WAStD |
| duplicate_surveys | List sites with more than one production survey on a given... |
| exclude_training_species | Exclude records with 'species' "corolla-corolla". |
| exclude_training_species_odkc | Exclude ODKC records with 'species' "corolla-corolla". |
| exclude_training_surveys | Exclude training surveys. |
| export_wastd_turtledata | Export all WAStD turtledata to CSV and GeoJSON files |
| extract_possibly | Wrap magrittr::extract to return field value or -1 |
| fdate_as_tdate | Days since fiscal year start as true date |
| filter_alive | Filter animal encounters to live outcomes: tagging, in water,... |
| filter_dead | Filter animal encounters to mortalities: strandings |
| filter_disturbance | Filter disturbance data to disturbances |
| filter_missing_site | Filter records with missing 'site_id' |
| filter_missing_survey | Filter records with missing 'survey_id' |
| filter_odkc_turtledata | Filter odkc_data to a given area_name. |
| filter_predation | Filter disturbance data to predator presences |
| filter_surveys_missing_end | Filter surveys with a missing 'end_source_id'. |
| filter_surveys_requiring_qa | Filter surveys with "NEEDS QA" in 'start_comments' or... |
| filter_wastd_season | Filter a dataframe of tracks, disturbance, incidents, or... |
| filter_wastd_turtledata | Filter WAStD turtledata to an area_name |
| filter_wastd_turtledata_area | Filter WAStD turtledata to an area_name |
| filter_wastd_turtledata_seasons | Filter WAStD turtledata to a season range |
| general_disturbance_by_season_odkc | Tally ODKC General disturbances by season, cause, and... |
| get_more | Decide whether the given download limit has been reached |
| ggplot_disturbance_by_season | Plot disturbance by season |
| ggplot_emergence_success | Plot Emergence Success for excavations of hatched nests |
| ggplot_hatching_success | Plot HS for excavations of hatched nests |
| ggplot_hatchling_misorientation | Return a ggplot violin plot of hatchling emergence... |
| ggplot_nesting_success_per_area_season_species | Return a stacked ggplot barchart of emergences |
| ggplot_nesting_success_per_area_season_species_pct | Return a ggplot of nesting success |
| ggplot_sighting_status_per_area_season_species | Return a stacked ggplot barchart of processed emergences by... |
| ggplot_total_emergences_per_area_season_species | Return a stacked ggplot barchart of emergences by processing... |
| ggplot_track_success_by_date | Plot the track success (absolute numbers) of a given species... |
| ggplot_track_successrate_by_date | Plot the track success rate (relative numbers) of a given... |
| gj_linestring_to_st_linestring | Convert a GeoJSON linestring into an st_linestring |
| handle_http_status | Emit a specific warning messages depending on HTTP status |
| hatching_emergence_success | Summarize HS and ES for Nest excavations |
| hatching_emergence_success_area | Summarize HS for excavations of hatched nests grouped by... |
| hatching_emergence_success_odkc | Summarize HS and ES for Nest excavations |
| hatching_emergence_success_site | Summarize HS and ES for excavations of hatched nests grouped... |
| httpdate_as_gmt08 | Return a UTC HTTP date string as POSIXct object in GMT+08 |
| httpdate_as_gmt08_turtle_date | Calculate the "turtle date" from a given datetime |
| httpdate_as_season | Calculate the "turtle season" (FY) from a given UTC HTTP... |
| humanize | Convert between url-safe dash-separated-strings and Human... |
| join_tsc_sites | Join a dataframe with lat/lon to sf objects of sites and... |
| leaflet_basemap | Create a Leaflet basemap for Western Australia |
| lifecycle_shim | Shim to allow Import of lifecycle, required for building... |
| list_survey_count | Create a table of survey counts from the output of... |
| list_survey_effort | Create a table from the surveyed hours from the output of... |
| map_chr_hack | Map given function, handle null as NA and flatten_chr() |
| map_dist | Map nest and general disturbance observations interactively. |
| map_dist_odkc | Map Disturbance observations interactively from ODK Central... |
| map_fanangles | Map turtle hatchling emergence orientation from wastd_data |
| map_mwi | Map Marine Wildlife Incident 0.6 |
| map_mwi_odkc | Map Marine Wildlife Incident 0.6 parsed with ruODK from ODK... |
| map_nests | Map tagged Turtle Nests interactively. |
| map_sv_odkc | Map Site Visit Start and End from ODK Central data over WAStD... |
| map_tracks | Map TurtleNestEncounters interactively. |
| map_tracks_odkc | Map tracks directly from ODK data |
| map_tt_odkc | Map Turtle Tagging 3.0 parsed with ruODK from ODK Central. |
| map_wamtram | Map WAMTRAM data |
| map_wastd | Map Marine Wildlife Incident 0.6 |
| map_wastd_wamtram_sites | Map WAStD and WAMTRAM sites |
| mean_bearing | Calculate the mean bearing of two bearings (from, to) |
| mis_bearing | Return the smallest possible angle for a sector's mean... |
| nest_disturbance_by_season_odkc | Tally ODKC Nest disturbances by season, cause, and encounter... |
| nesting_success_per_area_day_species | Calculate nesting success for emergences per area, day... |
| nesting_success_per_area_season_species | Calculate nesting success for emergences per area, season,... |
| nesting_type_by_area_season_age_species | Pivot table of nesting type by area, season, track age, and... |
| nesting_type_by_area_season_age_species_odkc | Pivot table of nesting type by area, season, track age, and... |
| nesting_type_by_area_season_species | Pivot table of nesting type by area, season, and species |
| nesting_type_by_area_season_species_odkc | Pivot table of nesting type by area, season, and species for... |
| nesting_type_by_season_age_species | Pivot table of nesting type by season, track age and species |
| nesting_type_by_season_age_species_odkc | Pivot table of nesting type by season, track age and species... |
| nesting_type_by_season_calendarday_age_species | Pivot table of nesting type by season, calendardate, and... |
| nesting_type_by_season_calendarday_age_species_odkc | Pivot table of nesting type by season, calendardate, and... |
| nesting_type_by_season_calendarday_species | Pivot table of nesting type by season, calendardate, and... |
| nesting_type_by_season_calendarday_species_odkc | Pivot table of nesting type by season, calendardate, and... |
| nesting_type_by_season_day_species | Pivot table of nesting type by season, turtle date. and... |
| nesting_type_by_season_day_species_odkc | Pivot table of nesting type by season, turtle date. and... |
| nesting_type_by_season_species | Pivot table of nesting type by season and species |
| nesting_type_by_season_species_odkc | Pivot table of nesting type by season and species for ODKC... |
| nesting_type_by_season_week_age_species | Pivot table of nesting type by season, season_week, iso_week,... |
| nesting_type_by_season_week_age_species_odkc | Pivot table of nesting type by season, season_week, iso_week,... |
| nesting_type_by_season_week_site_species | Pivot table of nesting type by season, season_week, iso_week,... |
| nesting_type_by_season_week_site_species_odkc | Pivot table of nesting type by season, season_week, iso_week,... |
| nesting_type_by_season_week_species | Pivot table of nesting type by season, season_week, iso_week,... |
| nesting_type_by_season_week_species_odkc | Pivot table of nesting type by season, season_week, iso_week,... |
| nesting_type_by_site_season_age_species | Pivot table of nesting type by site, season, track age, and... |
| nesting_type_by_site_season_age_species_odkc | Pivot table of nesting type by site, season, track age, and... |
| nesting_type_by_site_season_species | Pivot table of nesting type by site, season, and species |
| nesting_type_by_site_season_species_odkc | Pivot table of nesting type by site, season, and species for... |
| odkc_data | Turtle Nesting Census data from ODK Central. |
| odkc_works | Check whether ODKC is online |
| parse_animal_encounters | Parse a 'wastd_api_response' of 'animal-encounters' to tbl_df |
| parse_area | Parse a 'wastd_api_response' of 'area' to tbl_df |
| parse_area_sf | Parse a 'wastd_api_response' of 'area' to tbl_df and sf |
| parse_encounterobservations | Parse a 'wastd_api_response' of Encounter observations to... |
| parse_surveys | Parse a 'wastd_api_response' of 'surveys' to tbl_df |
| parse_turtle_nest_encounters | Parse a 'wastd_api_response' of 'turtle-nest-encounters' to... |
| pipe | Pipe operator |
| plot_survey_count | Plot the surveyed hours from the output of 'parse_surveys' |
| plot_survey_effort | Plot the surveyed hours from the output of 'parse_surveys' |
| print.odkc_turtledata | S3 print method for 'odkc_turtledata'. |
| print.wamtram_data | S3 print method for 'wamtram_data'. |
| print.wastd_api_response | S3 print method for 'wastd_api_response'. |
| print.wastd_data | S3 print method for 'wastd_data'. |
| read_table | Read a table from a SQL connection using either RODBC or DBI |
| sentencecase | Convert between url-safe dash-separated-strings and Human... |
| sf_as_tbl | Convert a SimpleFeatures object to a non-spatial dataframe |
| sfdeps | sf dependency |
| sighting_status_per_area_season_species | Calculate sighting status for emergences per area, season,... |
| sighting_status_per_site_season_species | Calculate sighting status for emergences per site, season,... |
| summarise_hatching_and_emergence_success | \lifecyclestable |
| summarise_wastd_data_per_day_site | Summarise WAStD data per day and site |
| survey_count | Return the number of surveys for a given site_id and season |
| survey_count_heatmap | Plot the survey count from the output of 'parse_surveys' as... |
| survey_ground_covered | Return the number of surveys for a given site_id and season |
| survey_hours_heatmap | Plot the surveyed hours from the output of 'parse_surveys' as... |
| survey_hours_per_person | Sum the hours surveyed per person by season from the output... |
| survey_hours_per_site_name_and_date | Sum the hours surveyed per site_name and turtle date from the... |
| survey_season_site_stats | Generate a season by site summary from the output of... |
| survey_season_stats | Generate a season summary from the output of 'parse_surveys' |
| survey_show_detail | Select main survey attributes |
| surveys_per_site_name_and_date | Count number of surveys per season, turtle date and site_name... |
| tdate_as_fdate | True date as days since fiscal year start |
| tidyeval | Tidy eval helpers |
| total_emergences_per_area_season_species | Calculate processing success for emergences per area, season,... |
| total_emergences_per_site_season_species | Calculate processing success for emergences per site, season,... |
| tracks_as_geojson | Convert tracks to a GeoJSON string |
| tracks_ts | Plot of nesting_type_by_season_day_species over time |
| track_success | Calculate nesting success as number of tracks with nests vs... |
| track_success_by_species | The nesting success grouped by season and species |
| tsc_data | TSC data, parsed, first ten records each |
| tun | A wrapper for 'tidyr::unnest_wider' |
| urlize | Convert between url-safe dash-separated-names and Human... |
| verify_odkc_turtledata | Abort if the parameter x is not of class 'wastd_data' |
| verify_wamtram_data | Abort if the parameter x is not of class 'wastd_data' |
| verify_wastd_data | Abort if the parameter x is not of class 'wastd_data' |
| w2_online | Test whether the Turtle Tagging Database WAMTRAM2 is... |
| wastd_ae | WAStD AnimalEncounters, parsed, test data captured by author |
| wastd_ae_raw | WAStD AnimalEncounters, unparsed, test data captured by... |
| wastd_area_raw | WAStD Areas, unparsed |
| wastd_bulk_post | Post a list of records to a WAStD or TSC API endpoint |
| wastd_chunk_post | POST data to a WAStD API serializer in chunks |
| wastd_create_update_skip | Create, update, skip records to a WAStD serializer. |
| wastd_data | Turtle Nesting Census data from WAStD |
| wastd_GET | Return GeoJSON features from a WAStD API endpoint |
| wastd_parse | Parse a 'wastd_api_response' into a tibble |
| wastd_POST | Send a POST request to WAStD's API |
| wastd_post_one | Post a one record to a WAStD / TSC API endpoint |
| wastdr_msg_abort | rlang::abort() with a red error message with a cross symbol. |
| wastdr_msg_info | Print a blue info message with an info symbol if verbose. |
| wastdr_msg_noop | Print a green noop message with a filled circle symbol if... |
| wastdr_msg_success | Print a green success message with a tick symbol if verbose. |
| wastdr_msg_warn | rlang::warn() with a yellow warning message with a warning... |
| wastdr-package | wastdr: WA Sea Turtle Database 'WAStD' API Wrapper |
| wastdr_settings | Get or set wastdr WAStD settings |
| wastdr_setup | Configure default WAStD settings |
| wastd_surveys_raw | WAStD Surveys, unparsed, test data captured by author |
| wastd_tne | WAStD TurtleNestEncounters, parsed, test data captured by... |
| wastd_tne_raw | WAStD TurtleNestEncounters, unparsed, test data captured by... |
| wastd_works | Check whether API token is set and WAStD is online |
