Description Usage Arguments Value
Return score of how likely a query occurs in a reference, given a starting index
1 2 3 4 5 6 7 8 9 10 11 12 | sousrir_ssdtw(
query_name,
ref_name,
query_feats,
ref_feats,
top_match_start,
min_match_ratio = 0.5,
max_match_ratio = 2,
distance_func = dist_scipy_stdeuc,
distnorm_func = norm_rf2014,
return_dtwalign = FALSE
)
|
query_name |
Name of query (for error reporting in case function fails) |
ref_name |
Name of reference (for error reporting in case function fails) |
query_feats |
Query feature matrix (of shape M rows and F columns) |
ref_feats |
Reference feature matrix (of shape N rows and F columns) |
top_match_start |
Top match location returned by sousrir_1nndtw |
min_match_ratio |
Minimum match length as ratio of query (default: 0.5 = half the query size) |
max_match_ratio |
Maximum match length as ratio of query (default: 2.0 = twice the query size) |
distance_func |
Function to compute distances between query and reference (default: dist_stdeuc) |
distnorm_func |
Function to normalize computed distances (default: norm_rf2014) |
return_dtwalign |
Whether or not to return alignment object (i.e. for plotting alignment) |
A numeric score of how likely the query occurs in the reference (or NA if no acceptable alignment was found given the parameters)
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