download_Yeast_Go_terms: downloads the description of Gene Ontology attributes
In pasculescu/ClusterJudge: Judging Quality of Clustering Methods using Mutual Information
Description
Usage
Arguments
Details
Value
Note
Author(s)
References
See Also
Examples
View source: R/download_Yeast_Go_terms.R
Description
The full description of Gene Ontology attributes are provided for example
by the Saccharomyces Genome Database (SGD).
Usage
1
2
download_Yeast_Go_terms(
url.GO.terms = "http://downloads.yeastgenome.org/curation/literature/go_terms.tab")
Arguments
url.GO.terms
The web site address where the description of Gene Ontology attribute files is located.
Details
The file is expected to be in tab delimited format having the following columns:
'GOID' ,'GO_Term', 'GO_Aspect', 'GO_Term_Definition'
Value
a data.frame containing the information provided by the
Gene Ontology consortium
Note
the function is optional. It only helps user in understanding what is the
meaning of the GO attributes for the Yeast examples.
Author(s)
Adrian Pasculescu
References
http://www.yeastgenome.org/ http://www.geneontology.org/
See Also
Examples
1
2
GO.terms <- download_Yeast_Go_terms()
str(GO.terms)
pasculescu/ClusterJudge documentation built on May 29, 2019, 4:52 p.m.
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Description Usage Arguments Details Value Note Author(s) References See Also Examples
View source: R/download_Yeast_Go_terms.R
Description
The full description of Gene Ontology attributes are provided for example by the Saccharomyces Genome Database (SGD).
Usage
1 2 | download_Yeast_Go_terms(
url.GO.terms = "http://downloads.yeastgenome.org/curation/literature/go_terms.tab")
|
Arguments
url.GO.terms |
The web site address where the description of Gene Ontology attribute files is located. |
Details
The file is expected to be in tab delimited format having the following columns: 'GOID' ,'GO_Term', 'GO_Aspect', 'GO_Term_Definition'
Value
a data.frame containing the information provided by the Gene Ontology consortium
Note
the function is optional. It only helps user in understanding what is the meaning of the GO attributes for the Yeast examples.
Author(s)
Adrian Pasculescu
References
http://www.yeastgenome.org/ http://www.geneontology.org/
See Also
Examples
1 2 | GO.terms <- download_Yeast_Go_terms()
str(GO.terms)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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