Description Usage Arguments Value Note Author(s) References Examples
View source: R/convert_Yeast_SGDId_2_systematic.R
converts the Saccharomyces Genome Database (SGD) Gene Id into the systematic name of the gene
1 | convert_Yeast_SGDId_2_systematic(SGD.Ids = c("S000007287", "S000007287", "S000007287"))
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SGD.Ids |
a vector of characters. Each element is a string representing a gene. |
a matrix of characters containing the input SGD gene Ids as first column and the corresponding Yeast systematic gene names as seccond column.
it requires online access to http://llama.mshri.on.ca/cgi/synergizer/serv where the conversion is performed.
It uses the httr and jsonlite R packages.
Adrian Pasculescu
Yeast - Systematic Names Assignment in http://www.yeastgenome.org/help/community
GF Berriz and FP Roth. The Synergizer service for translating gene, protein, and other biological identifiers. Bioinformatics 24(19)-2272 (2008).
1 2 3 4 | converted.genes <- convert_Yeast_SGDId_2_systematic(
SGD.Ids = c("S000007287", "S000007287", "S000007287"))
str(converted.genes)
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