sizedsubtree: Find a node subtending to a clade of desired size
In pasraia/RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
The function sizedsubtree scans a phylogentic tree to
randomly find nodes subtending to a subtree of desired minimum size, up to
one half of the tree size (number of tips).
Usage
1
sizedsubtree(tree,Size=NULL,time.limit=10)
Arguments
tree
a phylogenetic tree.
Size
the desired size of the tree subtending to the extracted node. By
default, the minimum tree size is set at one tenth of the tree size (i.e.
number of tips).
time.limit
specifies a limit to the searching time, a warning message
is thrown if the limit is reached.
Details
The argument time.limit sets the searching time. The
algorithm stops if that limit is reached, avoiding recursive search when no
solution is in fact possible.
Value
A node subtending to a subtree of desired minimum size.
Author(s)
Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro
Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco
Carotenuto
Examples
1
2
3
4
data("DataOrnithodirans")
DataOrnithodirans$treedino->treedino
sizedsubtree(tree=treedino,Size=40)
pasraia/RRphylo documentation built on Aug. 6, 2021, 9:42 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
The function sizedsubtree scans a phylogentic tree to
randomly find nodes subtending to a subtree of desired minimum size, up to
one half of the tree size (number of tips).
Usage
1 | sizedsubtree(tree,Size=NULL,time.limit=10)
|
Arguments
tree |
a phylogenetic tree. |
Size |
the desired size of the tree subtending to the extracted node. By default, the minimum tree size is set at one tenth of the tree size (i.e. number of tips). |
time.limit |
specifies a limit to the searching time, a warning message is thrown if the limit is reached. |
Details
The argument time.limit sets the searching time. The
algorithm stops if that limit is reached, avoiding recursive search when no
solution is in fact possible.
Value
A node subtending to a subtree of desired minimum size.
Author(s)
Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto
Examples
1 2 3 4 | data("DataOrnithodirans")
DataOrnithodirans$treedino->treedino
sizedsubtree(tree=treedino,Size=40)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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