Description Usage Arguments Details Value Examples
RAD is used to show structure community of species using different approaches to fited our date like Abundance, Relative Abundance and Log2.
These methods are the most used on ecology.
1 2 |
Vdata |
data.frame. Abundance dataset e.g. the first column is species name then communities |
name |
logial. used just plot is |
plot |
logical. used to plot RAD. |
method |
different methods to RAD plot. e.g. 'Abundance', 'Log2', 'Log10', 'Rel.Abun'. |
mixing |
Combining all abundance dataset in a plot |
... |
optional |
The function rad.fit
uses three different methods for fitting a curve. Abundance
is a bit used.
If plot = FALSE
. The function creates a list of all communities. Another way,
plot RAD.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | sps <- c('sp1','sp2','sp3','sp4','sp5','sp6','sp7','sp8','sp9','sp10','sp11','sp12','sp13',
'sp14','sp15')
comm1 <- c(5,4,3,5,6,1,4,5,65,87,12,45,67,89,23)
comm2 <- c(1,2,6,0,0,5,7,2,7,9,3,2,1,6,5)
comm3 <- c(335,123,57,3,4,0,0,0,0,12,34,54,11,3,0)
ec_data <- data.frame(sps,comm1, comm2, comm3)
# Plot
outcomes <- rad.fit(ec_data)
str(outcomes)
# Plot
outcomes <- rad.fit(ec_data, plot = T)
# Plot with names
outcomes <- rad.fit(ec_data, name=T, plot = T)
# Plot mixing
outcomes <- rad.fit(ec_data, plot = T, mixing = T)
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